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Report for CCDS54197.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54197.1 Public Homo sapiens 19 CELF5 24 110 108 CCDS HistoryNCBI Gene:60680Re-query CCDS DB by CCDS ID:54197.1Re-query CCDS DB by GeneID:60680See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54197.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000541430.6 ENSP00000443498.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541430.6Link to Ensembl Protein Viewer:ENSP00000443498.1Re-query CCDS DB by Nucleotide ID:ENST00000541430Re-query CCDS DB by Protein ID:ENSP00000443498
Original member Current member NCBI NM_001172673.2 NP_001166144.1 Accepted alive Link to Nucleotide Sequence:NM_001172673.2Link to Protein Sequence:NP_001166144.1Re-query CCDS DB by Nucleotide ID:NM_001172673Re-query CCDS DB by Protein ID:NP_001166144Link to BLAST:NP_001166144.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166144.1 409 Q8N6W0-2 409 100% 0 0

Chromosomal Locations for CCDS 54197.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3224740 3224998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3250985 3251067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3273872 3273923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3275856 3275984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3278031 3278110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3281199 3281345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3282126 3282267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3282427 3282498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3284902 3284964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3285942 3286025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3290272 3290374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3293319 3293334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGGCCCGCCTGACGGAGAGCGAGGCGCGCCGGCAGCAGCAGCAGCTCCTGCAGCCGCGGCCCTCGCCCG
TGGGCAGCAGCGGGCCCGAGCCCCCCGGGGGGCAGCCCGACGGCATGAAGGACCTGGACGCCATCAAACT
CTTCGTGGGCCAGATCCCGCGGCACCTGGACGAGAAGGACCTCAAGCCGCTCTTCGAGCAGTTCGGCCGC
ATCTACGAGCTCACGGTGCTCAAAGACCCCTACACGGGGATGCACAAAGGCTGTGCCTTCCTCACCTACT
GTGCCAGGGATTCCGCCATCAAAGCTCAGACTGCCCTGCACGAGCAGAAGACCTTGCCCGGAATGGCGCG
GCCAATCCAGGTGAAGCCTGCGGACAGTGAAAGCCGCGGAGGTAGGGACCGGAAGCTGTTCGTGGGGATG
CTGAACAAGCAGCAGTCGGAGGAGGACGTGCTGCGGCTGTTCCAGCCCTTCGGGGTCATTGACGAGTGCA
CCGTGCTCCGGGGGCCTGACGGCAGCAGCAAAGGCTGTGCTTTCGTGAAGTTCTCCTCCCACACGGAGGC
GCAGGCGGCCATCCACGCCTTGCATGGGAGCCAGACCATGCCGGGAGCCTCCTCCAGCCTGGTGGTCAAG
TTCGCCGACACGGACAAGGAGCGGACGCTCCGGCGCATGCAGCAGATGGTGGGCCAGCTGGGCATCCTGA
CGCCGTCCCTCACATTGCCCTTCAGCCCCTACAGTGCCTACGCCCAGGCTCTCATGCAACAGCAGACAAC
AGTCCTGTCCACCTCGGGCAGCTACCTGAGTCCCGGCGTGGCCTTCTCACCCTGTCACATCCAGCAGATA
GGCGCCGTCAGCCTCAACGGGCTGCCTGCCACACCCATCGCTCCTGCCTCTGGTGTCGTGCCCTTTCCAG
GTGGGCACCCTGCCCTGGAAACCGTCTATGCCAATGGCCTTGTGCCCTACCCAGCTCAGAGCCCGACTGT
GGCCGAGACACTGCATCCTGCCTTCTCCGGAGTCCAGCAGTACACAGCCATGTACCCCACCGCGGCCATC
ACGCCCATCGCGCACAGCGTCCCCCAGCCGCCGCCCCTCCTGCAGCAGCAGCAGCGAGAAGGAGTTTGGA
GACACGGAGCTGACGCAGATGTTCCTACCCTTCGGCAATATCATTTCCTCCAAGGTGTTTATGGATCGAG
CTACCAACCAGAGCAAGTGTTTCGGCTTCGTGAGCTTTGA

Translation (409 aa):
MARLTESEARRQQQQLLQPRPSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGR
IYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGM
LNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK
FADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQI
GAVSLNGLPATPIAPASGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAI
TPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHFLQGVYGSSYQPEQVFRLREL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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