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Report for CCDS54213.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54213.1 Public Homo sapiens 19 ZNF317 24 110 108 CCDS HistoryNCBI Gene:57693Re-query CCDS DB by CCDS ID:54213.1Re-query CCDS DB by GeneID:57693See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54213.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360385.7 ENSP00000353554.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360385.7Link to Ensembl Protein Viewer:ENSP00000353554.2Re-query CCDS DB by Nucleotide ID:ENST00000360385Re-query CCDS DB by Protein ID:ENSP00000353554
Original member Current member NCBI NM_001190791.2 NP_001177720.1 Accepted alive Link to Nucleotide Sequence:NM_001190791.2Link to Protein Sequence:NP_001177720.1Re-query CCDS DB by Nucleotide ID:NM_001190791Re-query CCDS DB by Protein ID:NP_001177720Link to BLAST:NP_001177720.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177720.1 563 Q96PQ6-2 563 100% 0 0

Chromosomal Locations for CCDS 54213.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 9156017 9156041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9156612 9156748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9157268 9157394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9158826 9158908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9160114 9161433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1692 nt):
ATGGCAGCTCTGTCCCCCACATTTGCCACGTCCACCCAGGATTCCACCTGTCTCCAGGACTCAGAATTTC
CTGTTTCTTCAAAAGACCATTCCTGTCCCCAGAATTTGGACCTGTTCGTGTGCAGTGGTCTGGAGCCTCA
CACACCCAGTGTTGGTTCCCAGGAATCGGTGACTTTCCAAGATGTCGCTGTGGACTTTACCGAGAAGGAG
TGGCCCTTGCTGGATTCTTCTCAGAGAAAACTGTACAAAGATGTAATGCTGGAGAACTACAGCAACCTCA
CTTCACTGGATTGGGAGACTCCATCTAAAACCAAGTGGTCACTTCTTATGGAAGATATTTTTGGGAAGGA
AACGCCCAGTGGTGTGACGATGGAAAGAGCCGGTCTTGGAGAGAAGTCCACTGAATACGCTCACTTGTTC
GAAGTCTTTGGCATGGACCCTCATCTCACTCAGCCAATGGGAAGGCACGCTGGCAAGAGGCCCTATCACC
GCCGCGACTATGGGGTAGCGTTCAAGGGCAGGCCGCACCTCACTCAGCACATGAGCATGTACGACGGGAG
AAAAATGCATGAATGTCATCAGTGCCAAAAAGCCTTCACCACGAGCGCGTCCCTCACACGGCACAGGAGA
ATCCACACCGGGGAGAAGCCTTACGAGTGCAGCGACTGCGGGAAAGCCTTCAACGACCCTTCAGCCCTTA
GGAGCCACGCAAGAACTCACCTCAAAGAGAAGCCCTTTGACTGCAGTCAGTGTGGAAATGCATTCCGGAC
CCTCTCGGCCCTGAAAATCCACATGCGAGTTCACACTGGCGAGAGGCCTTACAAGTGTGATCAGTGCGGG
AAGGCTTACGGCCGGAGCTGCCACCTCATCGCACACAAGAGAACGCACACCGGAGAGAGGCCCTACGAGT
GTCACGACTGTGGGAAAGCTTTCCAGCACCCCTCCCACCTCAAAGAGCACGTGAGGAATCACACGGGGGA
GAAGCCCTACGCGTGCACGCAGTGCGGCAAAGCCTTCCGCTGGAAGTCCAACTTTAATTTGCACAAGAAG
AACCACATGGTGGAGAAGACCTACGAATGTAAAGAATGCGGGAAATCCTTTGGCGATCTCGTGTCCCGGA
GGAAACACATGAGGATTCACATCGTCAAGAAACCCGTGGAATGTCGGCAGTGCGGGAAGACCTTCCGAAA
CCAGTCCATCCTTAAGACTCACATGAACTCTCACACTGGAGAGAAACCATACGGGTGCGATCTCTGCGGG
AAAGCTTTCAGCGCGAGTTCAAACCTCACCGCACACAGGAAGATACACACGCAAGAGAGACGCTACGAAT
GCGCCGCCTGCGGGAAAGTCTTCGGTGACTATTTATCCCGGCGGAGGCACATGAGCGTTCACCTTGTAAA
GAAACGAGTTGAGTGTAGGCAGTGTGGCAAGGCCTTCAGGAACCAGTCAACGCTGAAGACGCACATGCGA
AGCCACACGGGGGAGAAACCGTACGAATGCGATCACTGTGGGAAGGCCTTCAGCATAGGCTCCAACCTGA
ATGTGCACAGGCGGATCCACACCGGGGAGAAGCCCTACGAATGCCTTGTCTGCGGGAAAGCCTTCAGCGA
CCACTCATCCCTCAGGAGCCACGTGAAAACTCACCGGGGAGAGAAGCTCTTTGTGTCATCCGTGTGGAAA
AGGCTCCAGTGA

Translation (563 aa):
MAALSPTFATSTQDSTCLQDSEFPVSSKDHSCPQNLDLFVCSGLEPHTPSVGSQESVTFQDVAVDFTEKE
WPLLDSSQRKLYKDVMLENYSNLTSLDWETPSKTKWSLLMEDIFGKETPSGVTMERAGLGEKSTEYAHLF
EVFGMDPHLTQPMGRHAGKRPYHRRDYGVAFKGRPHLTQHMSMYDGRKMHECHQCQKAFTTSASLTRHRR
IHTGEKPYECSDCGKAFNDPSALRSHARTHLKEKPFDCSQCGNAFRTLSALKIHMRVHTGERPYKCDQCG
KAYGRSCHLIAHKRTHTGERPYECHDCGKAFQHPSHLKEHVRNHTGEKPYACTQCGKAFRWKSNFNLHKK
NHMVEKTYECKECGKSFGDLVSRRKHMRIHIVKKPVECRQCGKTFRNQSILKTHMNSHTGEKPYGCDLCG
KAFSASSNLTAHRKIHTQERRYECAACGKVFGDYLSRRRHMSVHLVKKRVECRQCGKAFRNQSTLKTHMR
SHTGEKPYECDHCGKAFSIGSNLNVHRRIHTGEKPYECLVCGKAFSDHSSLRSHVKTHRGEKLFVSSVWK
RLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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