NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54258.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54258.1 Public Homo sapiens 19 ZNF540 24 110 108 CCDS HistoryNCBI Gene:163255Re-query CCDS DB by CCDS ID:54258.1Re-query CCDS DB by GeneID:163255See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54258.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000589117.5 ENSP00000467118.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000589117.5Link to Ensembl Protein Viewer:ENSP00000467118.1Re-query CCDS DB by Nucleotide ID:ENST00000589117Re-query CCDS DB by Protein ID:ENSP00000467118
Original member Current member NCBI NM_001172226.3 NP_001165697.1 Accepted alive Link to Nucleotide Sequence:NM_001172226.3Link to Protein Sequence:NP_001165697.1Re-query CCDS DB by Nucleotide ID:NM_001172226Re-query CCDS DB by Protein ID:NP_001165697Link to BLAST:NP_001165697.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165697.1 628 Q8NDQ6-2 628 100% 0 0

Chromosomal Locations for CCDS 54258.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 37598448 37598456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37599626 37599752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37611513 37613263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1887 nt):
ATGGCCCATGCATTGGTGACGTTCAGGGATGTGGCTATAGACTTCTCTCAGAAGGAATGGGAGTGCCTGG
ACACTACCCAGAGGAAATTGTACAGAGATGTGATGTTGGAGAATTATAATAACTTGGTCTCACTGGGTTT
GTTATCCAGGCATAAGACCAAGAAATTATCTTCAGAAAAGGACATTCATGAAATCAGTTTATCCAAAGAG
AGTATAATAGAAAAAAGTAAAACTCTTCGTCTGAAAGGATCCATTTTTAGAAATGAGTGGCAGAACAAAA
GTGAGTTTGAGGGTCAACAGGGACTTAAAGAAAGATCTATCAGTCAAAAGAAAATCGTCTCTAAAAAAAT
GTCAACTGATAGAAAACGTCCCTCTTTTACTCTGAATCAGAGAATTCACAATAGTGAGAAAAGCTGTGAC
TCACACTTGGTTCAACATGGGAAAATAGATTCTGATGTGAAACATGATTGTAAAGAATGTGGGAGTACTT
TTAATAATGTCTATCAGCTTACTCTCCATCAGAAAATTCATACTGGTGAAAAATCCTGTAAATGTGAGAA
ATGTGGGAAAGTTTTTAGTCATAGCTATCAACTTACTCTGCATCAGAGATTTCATACTGGTGAGAAACCC
TATGAATGTCAAGAATGTGGGAAGACCTTTACTCTTTACCCACAACTTAATCGACATCAGAAAATTCACA
CTGGTAAAAAACCCTATATGTGTAAGAAATGTGATAAGGGTTTTTTTAGTAGATTAGAACTTACTCAACA
TAAAAGAATTCATACTGGTAAGAAATCTTATGAATGTAAAGAATGTGGAAAAGTTTTTCAACTTATTTTC
TACTTTAAAGAACATGAGAGAATTCATACAGGTAAGAAACCCTATGAATGTAAGGAGTGTGGGAAAGCTT
TTAGTGTATGCGGACAACTTACCCGTCATCAGAAAATTCATACTGGTGTAAAACCCTACGAATGTAAGGA
ATGTGGAAAGACCTTTAGACTTAGTTTTTACCTTACTGAACACAGAAGAACTCATGCAGGTAAGAAACCT
TATGAATGTAAGGAGTGTGGGAAATCATTTAATGTGCGTGGACAGCTTAATCGGCATAAAACAATCCATA
CTGGTATAAAACCTTTTGCATGTAAGGTGTGTGAGAAGGCTTTTAGTTATAGTGGTGACCTCAGAGTACA
TTCTAGAATTCATACTGGAGAGAAACCATATGAATGTAAGGAATGCGGGAAAGCCTTTATGCTTCGTTCA
GTCCTTACTGAACATCAGAGACTTCATACTGGTGTGAAGCCCTACGAATGTAAGGAATGTGGGAAGACCT
TTCGAGTTCGTTCTCAAATTAGTCTACATAAGAAAATTCATACTGATGTGAAGCCCTACAAATGTGTACG
ATGTGGGAAGACCTTTAGATTTGGTTTCTACCTTACTGAACACCAGAGAATTCACACTGGTGAAAAGCCC
TATAAATGTAAAGAATGTGGAAAGGCCTTTATTCGTAGAGGGAATCTTAAAGAACATCTGAAAATTCATT
CTGGTTTAAAACCCTATGACTGTAAAGAATGTGGGAAGTCCTTTAGTCGGCGTGGGCAGTTCACTGAACA
TCAGAAAATTCATACGGGTGTAAAACCATACAAATGTAAAGAATGTGGGAAGGCCTTTAGTCGTAGTGTA
GACCTTAGAATACATCAAAGAATTCATACTGGTGAGAAACCCTATGAGTGTAAACAATGTGGGAAGGCCT
TTAGACTTAATTCACACCTTACTGAACATCAGAGAATTCACACTGGTGAGAAACCCTATGAGTGTAAGGT
ATGTAGAAAGGCCTTTAGACAATATTCACATCTTTATCAACATCAGAAAACTCATAATGTAATTTAA

Translation (628 aa):
MAHALVTFRDVAIDFSQKEWECLDTTQRKLYRDVMLENYNNLVSLGLLSRHKTKKLSSEKDIHEISLSKE
SIIEKSKTLRLKGSIFRNEWQNKSEFEGQQGLKERSISQKKIVSKKMSTDRKRPSFTLNQRIHNSEKSCD
SHLVQHGKIDSDVKHDCKECGSTFNNVYQLTLHQKIHTGEKSCKCEKCGKVFSHSYQLTLHQRFHTGEKP
YECQECGKTFTLYPQLNRHQKIHTGKKPYMCKKCDKGFFSRLELTQHKRIHTGKKSYECKECGKVFQLIF
YFKEHERIHTGKKPYECKECGKAFSVCGQLTRHQKIHTGVKPYECKECGKTFRLSFYLTEHRRTHAGKKP
YECKECGKSFNVRGQLNRHKTIHTGIKPFACKVCEKAFSYSGDLRVHSRIHTGEKPYECKECGKAFMLRS
VLTEHQRLHTGVKPYECKECGKTFRVRSQISLHKKIHTDVKPYKCVRCGKTFRFGFYLTEHQRIHTGEKP
YKCKECGKAFIRRGNLKEHLKIHSGLKPYDCKECGKSFSRRGQFTEHQKIHTGVKPYKCKECGKAFSRSV
DLRIHQRIHTGEKPYECKQCGKAFRLNSHLTEHQRIHTGEKPYECKVCRKAFRQYSHLYQHQKTHNVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH