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Report for CCDS54300.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54300.1 Public Homo sapiens 19 VSIG10L 24 110 108 CCDS HistoryNCBI Gene:147645Re-query CCDS DB by CCDS ID:54300.1Re-query CCDS DB by GeneID:147645See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54300.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335624.5 ENSP00000335623.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335624.5Link to Ensembl Protein Viewer:ENSP00000335623.3Re-query CCDS DB by Nucleotide ID:ENST00000335624Re-query CCDS DB by Protein ID:ENSP00000335623
Original member Current member NCBI NM_001163922.3 NP_001157394.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001163922.3Link to Protein Sequence:NP_001157394.1Re-query CCDS DB by Nucleotide ID:NM_001163922Re-query CCDS DB by Protein ID:NP_001157394Link to BLAST:NP_001157394.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157394.1 867 Q86VR7-1 867 100% 0 0

Chromosomal Locations for CCDS 54300.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 51332611 51332640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51333791 51333945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51334191 51334304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51337238 51337534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51337930 51338208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51338888 51339142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51340015 51340299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51340433 51340726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51341153 51342007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51342085 51342124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2604 nt):
ATGGACAACCCACAGGCTCTGCCACTCTTCCTACTCCTGGCCTCCTTGGTAGGGATCCTCACCCTCAGAG
CCTCTTCTGGACTTCAGCAAACCAACTTCTCCTCTGCCTTCTCTTCAGACTCAAAGAGCTCTTCCCAGGG
GCTGGGTGTGGAAGTTCCCTCCATCAAACCTCCCAGCTGGAAAGTTCCAGATCAGTTCCTGGATTCAAAA
GCCTCTGCTGGAATCTCTGATTCCAGCTGGTTTCCTGAGGCCCTGAGTTCCAACATGTCTGGGTCCTTCT
GGTCAAATGTTTCTGCTGAGGGCCAAGATTTGAGCCCGGTTTCCCCCTTCTCTGAAACCCCTGGTTCTGA
AGTATTTCCTGATATTTCGGATCCTCAAGTTCCTGCCAAAGACCCCAAGCCTTCCTTCACTGTTAAGACC
CCAGCTTCAAACATTTCTACTCAAGTCTCCCATACCAAACTGTCTGTTGAGGCCCCAGATTCAAAATTCT
CCCCGGATGATATGGATCTTAAACTCTCTGCCCAGAGCCCTGAATCCAAATTTTCTGCAGAGACCCACTC
AGCTGCAAGCTTTCCCCAGCAGGTGGGGGGCCCACTCGCTGTGCTGGTGGGGACCACCATCCGGCTCCCC
CTAGTCCCAATCCCCAACCCTGGGCCCCCCACCTCTCTGGTGGTCTGGCGCCGGGGCTCAAAGGTGCTGG
CAGCTGGGGGCCTGGGGCCAGGGGCACCTCTGATCAGCCTGGACCCTGCTCACCGAGACCACCTGCGATT
TGACCAGGCCCGGGGGGTTCTGGAGCTCGCCTCTGCCCAGCTGGACGATGCAGGGGTCTACACGGCTGAG
GTCATCCGGGCAGGGGTCTCCCAGCAGACTCACGAGTTCACGGTGGGTGTGTATGAGCCCCTACCCCAGC
TGTCGGTTCAGCCCAAGGCTCCAGAGACAGAGGAGGGGGCGGCCGAGCTCCGGCTGCGCTGCCTGGGGTG
GGGGCCAGGTCGCGGGGAGCTGAGCTGGAGCCGGGACGGACGCGCCCTGGAGGCGGCGGAATCGGAGGGA
GCCGAGACGCCCCGGATGCGCTCAGAGGGCGACCAGCTGCTCATCGTGCGCCCTGTGCGCAGCGACCACG
CCCGGTACACTTGCCGCGTCCGCAGCCCCTTCGGCCACAGGGAGGCTGCCGCCGACGTCAGCGTCTTCTA
CGGCCCGGACCCGCCGACCATCACGGTCTCCTCGGACCGCGACGCCGCGCCTGCCCGCTTTGTCACCGCG
GGCAGTAACGTGACCTTGCGCTGCGCCGCCGCCTCGCGGCCGCCCGCCGACATCACGTGGAGCCTGGCGG
ACCCGGCCGAGGCCGCGGTGCCCGCGGGGTCGCGCCTCCTGCTGCCCGCGGTCGGACCGGGCCACGCAGG
CACCTACGCCTGCCTGGCGGCGAACCCGCGTACCGGCCGCCGCCGCCGCTCGCTGCTCAACCTTACAGTG
GCGGACCTGCCCCCCGGGGCCCCACAGTGCTCAGTTGAAGGGGGTCCCGGGGACCGCAGCCTCCGCTTCC
GCTGCTCGTGGCCCGGCGGGGCCCCTGCTGCCTCCCTGCAGTTCCAGGGTCTCCCCGAAGGCATCCGCGC
CGGGCCAGTGTCCTCTGTGCTGCTGGCGGCCGTCCCCGCCCACCCCCGGCTCAGCGGCGTCCCCATCACC
TGCCTTGCTCGCCACCTGGTGGCCACGCGTACCTGCACAGTCACGCCGGAGGCCCCCCGAGAGGTGCTGC
TGCATCCGCTGGTGGCAGAGACACGGTTGGGGGAGGCAGAGGTGGCACTGGAGGCCTCTGGTTGTCCCCC
ACCCTCACGGGCATCCTGGGCCCGGGAAGGGAGGCCCCTGGCTCCAGGAGGCGGGAGTCGCCTGCGGCTC
AGTCAAGATGGGCGGAAACTCCACATCGGCAACTTCAGCCTGGATTGGGACCTGGGAAATTACTCCGTGC
TGTGCAGTGGGGCGCTGGGTGCTGGCGGTGACCAGATCACCCTCATTGGACCCTCCATATCCTCGTGGAG
GCTTCAGAGAGCCAGAGATGCAGCCGTGCTGACTTGGGATGTGGAGCGCGGGGCCCTGATCAGCAGTTTT
GAGATCCAGGCATGGCCAGATGGGCCTGCTCTGGGCAGGACTTCCACCTACAGGGACTGGGTCTCCCTGC
TCATCCTGGGGCCTCAGGAGCGGTCAGCCGTGGTGCCCCTTCCACCTCGGAACCCAGGGACCTGGACCTT
TCGGATCCTGCCCATCCTGGGGGGCCAGCCAGGGACTCCATCACAAAGCCGGGTCTACCGGGCCGGCCCC
ACGTTGAGCCATGGGGCCATCGCTGGCATCGTCCTGGGCTCCCTGCTGGGCCTGGCGCTGCTAGCCGTAC
TTCTCCTCCTTTGCATCTGCTGCCTGTGCCGCTTTCGTGGAAAGACTCCTGAGAAAAAGAAGCATCCTTC
TACCTTGGTCCCCGTGGTCACCCCCTCAGAAAAGAAGATGCATAGTGTGACCCCAGTGGAGATTTCATGG
CCTCTGGACCTCAAAGTCCCTCTGGAGGACCACAGCTCAACTAGGGCCTACCAAGCACAGACCCCAGTTC
AGTTGTCTCTGTAG

Translation (867 aa):
MDNPQALPLFLLLASLVGILTLRASSGLQQTNFSSAFSSDSKSSSQGLGVEVPSIKPPSWKVPDQFLDSK
ASAGISDSSWFPEALSSNMSGSFWSNVSAEGQDLSPVSPFSETPGSEVFPDISDPQVPAKDPKPSFTVKT
PASNISTQVSHTKLSVEAPDSKFSPDDMDLKLSAQSPESKFSAETHSAASFPQQVGGPLAVLVGTTIRLP
LVPIPNPGPPTSLVVWRRGSKVLAAGGLGPGAPLISLDPAHRDHLRFDQARGVLELASAQLDDAGVYTAE
VIRAGVSQQTHEFTVGVYEPLPQLSVQPKAPETEEGAAELRLRCLGWGPGRGELSWSRDGRALEAAESEG
AETPRMRSEGDQLLIVRPVRSDHARYTCRVRSPFGHREAAADVSVFYGPDPPTITVSSDRDAAPARFVTA
GSNVTLRCAAASRPPADITWSLADPAEAAVPAGSRLLLPAVGPGHAGTYACLAANPRTGRRRRSLLNLTV
ADLPPGAPQCSVEGGPGDRSLRFRCSWPGGAPAASLQFQGLPEGIRAGPVSSVLLAAVPAHPRLSGVPIT
CLARHLVATRTCTVTPEAPREVLLHPLVAETRLGEAEVALEASGCPPPSRASWAREGRPLAPGGGSRLRL
SQDGRKLHIGNFSLDWDLGNYSVLCSGALGAGGDQITLIGPSISSWRLQRARDAAVLTWDVERGALISSF
EIQAWPDGPALGRTSTYRDWVSLLILGPQERSAVVPLPPRNPGTWTFRILPILGGQPGTPSQSRVYRAGP
TLSHGAIAGIVLGSLLGLALLAVLLLLCICCLCRFRGKTPEKKKHPSTLVPVVTPSEKKMHSVTPVEISW
PLDLKVPLEDHSSTRAYQAQTPVQLSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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