NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54337.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54337.1 Public Homo sapiens 2 GAREM2 24 110 108 CCDS HistoryNCBI Gene:150946Re-query CCDS DB by CCDS ID:54337.1Re-query CCDS DB by GeneID:150946See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54337.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000407684.1 ENSP00000384581.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000407684.1Link to Ensembl Protein Viewer:ENSP00000384581.1Re-query CCDS DB by Nucleotide ID:ENST00000407684Re-query CCDS DB by Protein ID:ENSP00000384581
Original member Current member NCBI NM_001191033.2 NP_001177962.1 Accepted alive Link to Nucleotide Sequence:NM_001191033.2Link to Protein Sequence:NP_001177962.1Re-query CCDS DB by Nucleotide ID:NM_001191033Re-query CCDS DB by Protein ID:NP_001177962Link to BLAST:NP_001177962.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177962.1 664 Q75VX8-3 664 100% 0 0

Chromosomal Locations for CCDS 54337.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 26182472 26182493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26182967 26183097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26184233 26185276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26186189 26186358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26187231 26187315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26187715 26188257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1995 nt):
ATGCACAGGATGCCAGATCCAGGGAAGTTCAAGCTCCTGGAACAGGCCCGGGATGTGCGGGAGCCAGTGA
GGTACTTCAGCAGCGTGGAGGAGGTGGCCAGTGTCTTCCCTGACCGCATCTTCGTGATGGAAGCCATCAC
CTTCAGCGTCAAGGTGGTGTCGGGCGAGTTCAGCGAGGACAGCGAGGTGTACAACTTCACGCTGCATGCG
GGCGACGAGCTCACTCTTATGGGCCAGGCGGAGATCCTGTGCGCCAAGACCACCAAGGAGCGCTCGCGCT
TCACCACCCTCCTGCGAAAGCTGGGCCGGGCCGGGGCGCTGGCCGGGGTGGGCGGCGGCGGCCCAGCGAG
CGCGGGGGCCGCGGGAGGCACTGGCGGCGGGGGCGCCAGGCCGGTCAAAGGCAAGATGCCCTGCCTCATC
TGCATGAACCACCGCACCAACGAAAGCCTGAGCCTGCCCTTTCAGTGCCAGGGCCGCTTCAGCACTCGCA
GCCCGCTGGAGCTGCAGATGCAAGAGGGCGAGCACACGGTGCGCGCCATCATCGAGCGCGTGAGGCTGCC
GGTGAACGTGCTGGTGCCCAGCCGGCCGCCGCGCAACCCCTACGACCTGCACCCGGTGCGGGAGGGTCAT
TGCTACAAGCTGGTTAGCATCATCTCCAAGACGGTGGTGCTGGGGCTGGCGCTGCGCCGCGAGGGCCCGG
CGCCGCTGCACTTCCTGCTGCTCACGGACACGCCGCGCTTCGCGCTGCCGCAGGGCCTGCTGGCCGGGGA
CCCGCGCGTCGAGCGCCTGGTGCGCGACAGCGCCTCCTACTGCCGCGAGCGCTTCGACCCCGACGAGTAC
TCCACGGCCGTGCGCGAGGCGCCAGCGGAGCTCGCCGAAGACTGCGCCAGCCCGCGCCGCGCGCGCCTCT
GCCTGCCCGCGCCGCGCGCCCCCGGGCTCGCCCGCGCCCCCGGCCCGCTAGCGCCGGCTCCCGCCGGCGA
GGGCGACCAGGAGTACGTGAGCCCCGACTGGGCAGCCGCGCCCGAGCCCGCCGCGCCGCCCGCCGAGATC
CCCTACGAGGAGTTGTGGGCGCACCAGGGGCCCGAGGGCCTCGTCCGGCCGCCCCCAGGGCTCGATCTCA
TCTCCTTCGGGGCCGCGGGACCGCCGCGTCGGGAGCCGGAAGCGCCGCCGCCTCCAGTCCCTCCCAAATC
CGAGGCGGTGAAGGAGGAGTGCCGCCTGCTCAATGCCCCTCCAGTGCCTCCCCGGGGTGGCAATGGCAGC
GGCCGGCTCTCCAGCAGCCCCCCGGTTCCCCCTCGCTTCCCCAAGCTGCAGCCGGTACATTCCCCCAGCT
CCAGCCTCTCCTACTACTCCTCTGGCCTCCAGGATGGGGCGGGTTCCCGCAGTGGCAGTGGCTCCCCATC
GCCGGACACCTACTCCCTCTATTGCTACCCATGCACCTGGGGAGACTGCAAGGAACCAGTCCTGGAGCCC
TTCGATCCCTTTGAGCTGGGGCAGGGCAGTTCTCCAGAGCCTGAGCTGCTGCGTTCTCAGGAGCCCAGAG
CAGTGGGGACACCTGGGCCTGGACCCCGCCTTTCACCACTTGGCCCCTCCAAGGCCTTTGAGCCTGAAGG
TTTGGTGCTGCACCAGGTCCCCACCCCACTGTCACCAGCTGCTCTGCAGGGACCCGAGGCGGGAGGAGCA
CTTTTTCTAACCCAAGGGCGCCTGGAAGGGCCTCCTGCCAGTCCCCGGGATGGAGCCACAGGCTTTGGAG
TCCGAGATGCCTCCTCCTGGCAGCCCCCTGCTGACCTGTCTGCACTCTCCCTGGAGGAGGTCTCTCGCAG
TCTGCGTTTCATCGGGCTCTCAGAGGATGTGGTGAGCTTCTTTGCCCGAGAACGCATCGATGGTAGCATC
TTTGTGCAGCTCAGTGAGGACATCCTGGCAGATGACTTCCACCTCACCAAGCTGCAGGTCAAGAAGATCA
TGCAGTTCATCAAAGGCTGGAGGCCCAAGATCTGA

Translation (664 aa):
MHRMPDPGKFKLLEQARDVREPVRYFSSVEEVASVFPDRIFVMEAITFSVKVVSGEFSEDSEVYNFTLHA
GDELTLMGQAEILCAKTTKERSRFTTLLRKLGRAGALAGVGGGGPASAGAAGGTGGGGARPVKGKMPCLI
CMNHRTNESLSLPFQCQGRFSTRSPLELQMQEGEHTVRAIIERVRLPVNVLVPSRPPRNPYDLHPVREGH
CYKLVSIISKTVVLGLALRREGPAPLHFLLLTDTPRFALPQGLLAGDPRVERLVRDSASYCRERFDPDEY
STAVREAPAELAEDCASPRRARLCLPAPRAPGLARAPGPLAPAPAGEGDQEYVSPDWAAAPEPAAPPAEI
PYEELWAHQGPEGLVRPPPGLDLISFGAAGPPRREPEAPPPPVPPKSEAVKEECRLLNAPPVPPRGGNGS
GRLSSSPPVPPRFPKLQPVHSPSSSLSYYSSGLQDGAGSRSGSGSPSPDTYSLYCYPCTWGDCKEPVLEP
FDPFELGQGSSPEPELLRSQEPRAVGTPGPGPRLSPLGPSKAFEPEGLVLHQVPTPLSPAALQGPEAGGA
LFLTQGRLEGPPASPRDGATGFGVRDASSWQPPADLSALSLEEVSRSLRFIGLSEDVVSFFARERIDGSI
FVQLSEDILADDFHLTKLQVKKIMQFIKGWRPKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH