NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54341.1 Public Homo sapiens 2 SLC30A6 24 110 108 CCDS HistoryNCBI Gene:55676Re-query CCDS DB by CCDS ID:54341.1Re-query CCDS DB by GeneID:55676See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54341.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379343.6 ENSP00000368648.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379343.6Link to Ensembl Protein Viewer:ENSP00000368648.2Re-query CCDS DB by Nucleotide ID:ENST00000379343Re-query CCDS DB by Protein ID:ENSP00000368648
Original member Current member NCBI NM_001193513.3 NP_001180442.1 Accepted alive Link to Nucleotide Sequence:NM_001193513.3Link to Protein Sequence:NP_001180442.1Re-query CCDS DB by Nucleotide ID:NM_001193513Re-query CCDS DB by Protein ID:NP_001180442Link to BLAST:NP_001180442.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180442.1 501 Q6NXT4-2 501 100% 0 0

Chromosomal Locations for CCDS 54341.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32165901 32165903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32171287 32171373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32174063 32174147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32175319 32175361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32177477 32177596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32184273 32184338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32192336 32192416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32192918 32192953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32193889 32193983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32197344 32197392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32197707 32197826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32204590 32204692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32206886 32206933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32209493 32209561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32220213 32220713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGGGGACAATTCATCTCTTTCGAAAACCACAAAGATCCTTTTTTGGCAAGTTGTTACGGGAATTTAGAC
TTGTAGCAGCTGACCGAAGGTCCTGGAAGATACTGCTCTTTGGTGTAATAAACTTGATATGTACTGGCTT
CCTGCTTATGTGGTGCAGTTCTACTAATAGTATAGCTTTAACTGCCTATACTTACCTGACCATTTTTGAT
CTTTTTAGAGACGGGGTTTCACCATTTTGGCTGGGCTGGTCTCAAACTCCTGACCTCAAGTGGTCCACCC
ACCTCGGCCTACCAAAGTGCTGGGATAACAGGCGTGAGCTACCGTGCCTGAGCAATAGTTTAATGACATG
TTTAATAAGTTACTGGGTAACATTGAGGAAACCTAGCCCTGTCTATTCATTTGGGTTTGAAAGATTAGAA
GTCCTGGCTGTATTTGCCTCCACAGTCTTGGCACAGTTGGGAGCTCTCTTTATATTAAAAGAAAGTGCAG
AACGCTTTTTGGAACAGCCCGAGATACACACGGGAAGATTATTAGTTGGTACTTTTGTGGCTCTTTGTTT
CAACCTGTTCACGATGCTTTCTATTCGGAATAAACCTTTTGCTTATGTCTCAGAAGCTGCTAGTACGAGC
TGGCTTCAAGAGCATGTTGCAGATCTTAGTCGAAGCTTGTGTGGAATTATTCCGGGACTTAGCAGTATCT
TCCTTCCCCGAATGAATCCATTTGTTTTGATTGATCTTGCTGGAGCATTTGCTCTTTGTATTACATATAT
GCTCATTGAAATTAATAATTATTTTGCCGTAGACACTGCCTCTGCTATAGCTATTGCCTTGATGACATTT
GGCACTATGTATCCCATGAGTGTGTACAGTGGGAAAGTCTTACTCCAGACAACACCACCCCATGTTATTG
GTCAGTTGGACAAACTCATCAGAGAGGTATCTACCTTAGATGGAGTTTTAGAAGTCCGAAATGAACATTT
TTGGACCCTAGGTTTTGGCTCATTGGCTGGATCAGTGCATGTAAGAATTCGACGAGATGCCAATGAACAA
ATGGTTCTTGCTCATGTGACCAACAGGCTGTACACTCTAGTGTCTACTCTAACTGTTCAAATTTTCAAGG
ATGACTGGATTAGGCCTGCCTTATTGTCTGGGCCTGTTGCAGCCAATGTCCTAAACTTTTCAGATCATCA
CGTAATCCCAATGCCTCTTTTAAAGGGTACTGATGATTTGAACCCAGTTACATCAACTCCAGCTAAACCT
AGTAGTCCACCTCCAGAATTTTCATTTAACACTCCTGGGAAAAATGTGAACCCAGTTATTCTTCTAAACA
CACAAACAAGGCCTTATGGTTTTGGTCTCAATCATGGACACACACCTTACAGCAGCATGCTTAATCAAGG
ACTTGGAGTTCCAGGAATTGGAGCAACTCAAGGATTGAGGACTGGTTTTACAAATATACCAAGTAGATAT
GGAACTAATAATAGAATTGGACAACCAAGACCATGA

Translation (501 aa):
MGTIHLFRKPQRSFFGKLLREFRLVAADRRSWKILLFGVINLICTGFLLMWCSSTNSIALTAYTYLTIFD
LFRDGVSPFWLGWSQTPDLKWSTHLGLPKCWDNRRELPCLSNSLMTCLISYWVTLRKPSPVYSFGFERLE
VLAVFASTVLAQLGALFILKESAERFLEQPEIHTGRLLVGTFVALCFNLFTMLSIRNKPFAYVSEAASTS
WLQEHVADLSRSLCGIIPGLSSIFLPRMNPFVLIDLAGAFALCITYMLIEINNYFAVDTASAIAIALMTF
GTMYPMSVYSGKVLLQTTPPHVIGQLDKLIREVSTLDGVLEVRNEHFWTLGFGSLAGSVHVRIRRDANEQ
MVLAHVTNRLYTLVSTLTVQIFKDDWIRPALLSGPVAANVLNFSDHHVIPMPLLKGTDDLNPVTSTPAKP
SSPPPEFSFNTPGKNVNPVILLNTQTRPYGFGLNHGHTPYSSMLNQGLGVPGIGATQGLRTGFTNIPSRY
GTNNRIGQPRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH