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Report for CCDS54393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54393.1 Public Homo sapiens 2 EPB41L5 24 110 108 CCDS HistoryNCBI Gene:57669Re-query CCDS DB by CCDS ID:54393.1Re-query CCDS DB by GeneID:57669See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54393.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000443902.6 ENSP00000393856.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000443902.6Link to Ensembl Protein Viewer:ENSP00000393856.2Re-query CCDS DB by Nucleotide ID:ENST00000443902Re-query CCDS DB by Protein ID:ENSP00000393856
Original member Current member NCBI NM_001184937.2 NP_001171866.1 Accepted alive Link to Nucleotide Sequence:NM_001184937.2Link to Protein Sequence:NP_001171866.1Re-query CCDS DB by Nucleotide ID:NM_001184937Re-query CCDS DB by Protein ID:NP_001171866Link to BLAST:NP_001171866.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171866.1 687 Q9HCM4-4 687 100% 0 0

Chromosomal Locations for CCDS 54393.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 120019085 120019264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120042006 120042110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120073178 120073220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120074100 120074178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120075476 120075520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120075701 120075753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120076971 120077091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120077229 120077316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120078493 120078581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120087171 120087240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120090347 120090516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120091555 120091661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120093249 120093276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120100244 120100286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120100699 120100814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120127688 120127851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120131618 120131715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120143003 120143131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120146225 120146289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120160881 120160974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120164836 120164910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120167466 120167507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120174841 120174900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2064 nt):
ATGCTGAGTTTCTTCCGTAGAACACTAGGGCGTCGGTCTATGCGTAAACATGCAGAGAAGGAACGACTCC
GAGAAGCACAACGCGCCGCCACACATATTCCTGCAGCTGGAGATTCTAAGTCCATCATCACGTGTCGGGT
GTCCCTTCTGGATGGTACTGATGTTAGTGTGGACTTGCCAAAAAAAGCCAAAGGACAAGAGTTGTTTGAT
CAGATTATGTACCACCTGGACCTGATTGAAAGCGACTATTTTGGTCTGAGATTTATGGATTCAGCACAAG
TAGCACATTGGTTGGATGGTACAAAAAGCATCAAAAAGCAAGTAAAAATTGGTTCACCCTATTGTCTGCA
TCTTCGAGTTAAGTTTTATTCCTCAGAACCAAATAACCTTCGTGAGGAGCTAACCCGGTATTTATTTGTT
CTTCAGTTAAAACAAGATATTCTCAGTGGAAAATTAGACTGTCCCTTTGATACAGCAGTGCAATTGGCAG
CTTATAATCTGCAAGCTGAACTTGGTGACTATGATCTTGCTGAGCATAGTCCTGAACTTGTCTCAGAGTT
CAGATTCGTGCCTATTCAGACTGAAGAGATGGAACTGGCTATTTTTGAGAAATGGAAGGAATACAGAGGT
CAAACACCAGCACAGGCTGAAACCAATTATCTGAATAAAGCCAAATGGCTAGAAATGTATGGGGTTGATA
TGCATGTGGTCAAGGCTAGAGATGGGAATGACTATAGTTTGGGACTAACACCAACAGGAGTCCTTGTTTT
TGAAGGAGATACCAAAATTGGCTTATTTTTTTGGCCGAAGATAACCAGATTGGATTTTAAGAAGAATAAA
TTAACCTTGGTGGTTGTAGAAGATGATGATCAGGGCAAAGAACAGGAACATACATTTGTCTTTAGACTGG
ATCATCCAAAAGCATGCAAACATTTATGGAAATGTGCTGTGGAGCATCATGCTTTCTTCCGCCTTCGAGG
CCCCGTCCAAAAGAGTTCTCATCGATCAGGATTTATTCGACTAGGATCACGATTTAGATATAGTGGGAAA
ACAGAGTATCAGACCACAAAAACCAATAAAGCAAGAAGATCAACATCCTTTGAAAGAAGGCCCAGCAAAC
GATATTCTAGACGAACTCTACAAATGAAAGCATGTGCTACAAAACCTGAAGAACTTAGTGTTCACAATAA
TGTTTCGACCCAAAGTAATGGCTCCCAACAGGCTTGGGGGATGAGATCTGCTCTGCCTGTGAGTCCTTCC
ATTTCCTCTGCTCCTGTGCCAGTGGAGATAGAGAATCTTCCACAGAGTCCTGGAACAGACCAGCATGACA
GGAAATGCATTCCTCTGAATATTGATTTGCTGAATAGCCCAGACTTATTGGAAGCAACGATTGGTGATGT
AATTGGGGCATCTGACACTATGGAAACATCCCAAGCACTGAATGACGTTAATGTAGCCACCAGGCTTCCG
GGATTAGGGGAACCTGAAGTTGAATATGAGACATTAAAAGACACCTCAGAGAAGCTCAAACAGCTTGAGA
TGGAGAACAGTCCTTTGCTGTCCCCTCGATCCAACATCGATGTTAACATAAACAGCCAGGAGGAAGTGGT
GAAGTTGACTGAGAAATGCCTTAATAATGTCATTGAGAGCCCAGGATTGAATGTCATGAGAGTTCCTCCT
GACTTCAAGAGTAACATTTTGAAGGCTCAAGTAGAAGCAGTGCATAAGGTTACAAAAGAAGATAGCTTAT
TAAGTCATAAAAATGCCAATGTTCAGGATGCTGCCACAAACAGTGCTGTGTTAAATGAGAATAATGTGCC
CCTCCCCAAAGAGTCTCTTGAGACTCTGATGCTTATCACACCTGCCGACAGTGGTTCTGTTCTAAAGGAA
GCTACAGATGAATTGGATGCCTTGCTTGCATCTCTAACTGAGAATCTAATTGATCACACAGTTGCACCTC
AGGTGTCTTCCACATCCATGATCACACCCCGGTGGATTGTTCCGCTCTGGTCCCATTTTGGCAGAAGAAG
CTGTCCTGAAGCAGAAGTGTTTACTGACCACTGA

Translation (687 aa):
MLSFFRRTLGRRSMRKHAEKERLREAQRAATHIPAAGDSKSIITCRVSLLDGTDVSVDLPKKAKGQELFD
QIMYHLDLIESDYFGLRFMDSAQVAHWLDGTKSIKKQVKIGSPYCLHLRVKFYSSEPNNLREELTRYLFV
LQLKQDILSGKLDCPFDTAVQLAAYNLQAELGDYDLAEHSPELVSEFRFVPIQTEEMELAIFEKWKEYRG
QTPAQAETNYLNKAKWLEMYGVDMHVVKARDGNDYSLGLTPTGVLVFEGDTKIGLFFWPKITRLDFKKNK
LTLVVVEDDDQGKEQEHTFVFRLDHPKACKHLWKCAVEHHAFFRLRGPVQKSSHRSGFIRLGSRFRYSGK
TEYQTTKTNKARRSTSFERRPSKRYSRRTLQMKACATKPEELSVHNNVSTQSNGSQQAWGMRSALPVSPS
ISSAPVPVEIENLPQSPGTDQHDRKCIPLNIDLLNSPDLLEATIGDVIGASDTMETSQALNDVNVATRLP
GLGEPEVEYETLKDTSEKLKQLEMENSPLLSPRSNIDVNINSQEEVVKLTEKCLNNVIESPGLNVMRVPP
DFKSNILKAQVEAVHKVTKEDSLLSHKNANVQDAATNSAVLNENNVPLPKESLETLMLITPADSGSVLKE
ATDELDALLASLTENLIDHTVAPQVSSTSMITPRWIVPLWSHFGRRSCPEAEVFTDH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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