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Report for CCDS54419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54419.1 Public Homo sapiens 2 DCAF17 24 110 108 CCDS HistoryNCBI Gene:80067Re-query CCDS DB by CCDS ID:54419.1Re-query CCDS DB by GeneID:80067See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 54419.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539783.5 ENSP00000442238.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539783.5Link to Ensembl Protein Viewer:ENSP00000442238.1Re-query CCDS DB by Nucleotide ID:ENST00000539783Re-query CCDS DB by Protein ID:ENSP00000442238
Original member Current member NCBI NM_001164821.2 NP_001158293.1 Accepted alive Link to Nucleotide Sequence:NM_001164821.2Link to Protein Sequence:NP_001158293.1Re-query CCDS DB by Nucleotide ID:NM_001164821Re-query CCDS DB by Protein ID:NP_001158293Link to BLAST:NP_001158293.1

Chromosomal Locations for CCDS 54419.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 171434578 171434703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 171435083 171435186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 171443523 171443613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 171448681 171448817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 171449879 171449957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 171453124 171453213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 171457971 171458075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 171458372 171458477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 171468888 171469030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 171477987 171478070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 171480038 171480193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 171480974 171481114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGGGCCCGACCCGGAAGCCCAACGTGTGCAGCCGGCTGAGTCGCCGGGCGCTGGGCTGCTTCTCGCGCG
ACGCAGGCGTGGTGCAGAGGACCAACCTGGGCATCCTGCGGGCGCTGGTGTGCCAGGAAAGTACTAAATT
TAAGAATGTCTGGACAACTCATTCCAGGTCACCTATAGCCTATGAGAGAGGAAGAATATATTTTGACAAT
TATCGGCGCTGTGTCAGCAGTGTTGCATCTGAGCCAAGAAAACTTTATGAAATGCCAAAATGTTCCAAAT
CAGAAAAAATAGAGGATGCTTTATTATGGGAATGCCCAGTGGGAGATATACTTCCCAATTCATCAGATTA
TAAGTCCTCACTCATAGCACTGACTGCTCATAATTGGCTACTTCGTATATCAGCAACTACGGGAAAAATC
CTTGAGAAAATATATCTTGCACCTTATTGCAAATTCAGATACTTGAGCTGGGACACTCCTCAAGAAGTCA
TTGCAGTTAAGTCAGCTCAGAACAGAGGCTCAGCAGTGGCCCGGCAGGCAGGCATTCAACAACATGTTTT
GCTGTACCTTGCAGTGTTCCGAGTTCTACCTTTTTCACTTGTAGGGATTCTAGAGATCAACAAAAAGATT
TTTGGGAACGTTACAGATGCTACCTTGTCTCATGGAATACTGATTGTGATGTACAGCTCAGGACTGGTCA
GACTCTATAGCTTCCAAACCATCGCTGAACAGTTCATGCAACAGAAACTTGACTTAGGGTGTGCATGCAG
ATGGGGTGGGACTACTGGAACTGTAGGAGAGGCTCCTTTTGGCATTCCTTGTAATATTAAAATCACAGAC
ATGCCACCACTGCTCTTTGAGGTGTCATCCCTGGAGAATGCTTTTCAGATTGGAGGCCATCCTTGGCACT
ACATCGTCACACCTAATAAGAAGAAACAGAAAGGAGTTTTCCATATTTGTGCCCTAAAAGACAATTCCCT
GAATGAAAATGTACTCACTGTTACAGCTTCTGGACGGGTGGTAAAAAAAAGTTTTAACCTTCTGGATGAT
GACCCAGAACAAGAGACTTTCAAAATTGTGGACTATGAAGATGAGTTAGATTTGCTTTCTGTGGTAGCTG
TTACTCAAATAGATGCTGAAGGAAAAGCTCACCTGGATTTCCACTGTAATGAATATGGAACTTTACTTAA
AAGCATTCCACTAGTGGAGTCATGGGATGTGACATATAGCCATGAAGTCTACTTTGACAGAGACTTGGTG
CTACACATAGAGCAGAAACCCAACAGAGTCTTCAGCTGCTATGTTTACCAGATGATATGTGACACTGGGG
AAGAAGAAGAAACCATAAACAGAAGCTGTTAA

Translation (453 aa):
MGPTRKPNVCSRLSRRALGCFSRDAGVVQRTNLGILRALVCQESTKFKNVWTTHSRSPIAYERGRIYFDN
YRRCVSSVASEPRKLYEMPKCSKSEKIEDALLWECPVGDILPNSSDYKSSLIALTAHNWLLRISATTGKI
LEKIYLAPYCKFRYLSWDTPQEVIAVKSAQNRGSAVARQAGIQQHVLLYLAVFRVLPFSLVGILEINKKI
FGNVTDATLSHGILIVMYSSGLVRLYSFQTIAEQFMQQKLDLGCACRWGGTTGTVGEAPFGIPCNIKITD
MPPLLFEVSSLENAFQIGGHPWHYIVTPNKKKQKGVFHICALKDNSLNENVLTVTASGRVVKKSFNLLDD
DPEQETFKIVDYEDELDLLSVVAVTQIDAEGKAHLDFHCNEYGTLLKSIPLVESWDVTYSHEVYFDRDLV
LHIEQKPNRVFSCYVYQMICDTGEEEETINRSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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