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Report for CCDS54436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54436.1 Public Homo sapiens 2 PSMD1 24 110 108 CCDS HistoryNCBI Gene:5707Re-query CCDS DB by CCDS ID:54436.1Re-query CCDS DB by GeneID:5707See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54436.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373635.9 ENSP00000362738.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373635.9Link to Ensembl Protein Viewer:ENSP00000362738.4Re-query CCDS DB by Nucleotide ID:ENST00000373635Re-query CCDS DB by Protein ID:ENSP00000362738
Original member Current member NCBI NM_001191037.2 NP_001177966.1 Accepted alive Link to Nucleotide Sequence:NM_001191037.2Link to Protein Sequence:NP_001177966.1Re-query CCDS DB by Nucleotide ID:NM_001191037Re-query CCDS DB by Protein ID:NP_001177966Link to BLAST:NP_001177966.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177966.1 922 Q99460-2 922 100% 0 0

Chromosomal Locations for CCDS 54436.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 231057026 231057041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231061267 231061310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231062248 231062321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231062506 231062675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231066906 231067111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231070025 231070168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231072189 231072415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231075511 231075571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231077034 231077162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231078659 231078747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231079536 231079614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231080141 231080314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231082883 231082994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231083567 231083763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231085019 231085114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231087117 231087181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231138736 231138850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231146240 231146356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231153564 231153666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231161340 231161509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231165200 231165286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231165871 231166017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231170566 231170712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2769 nt):
ATGATCACCTCGGCCGCTGGAATTATTTCTCTTCTGGATGAAGATGAACCACAGCTTAAGGAATTTGCAC
TA
CACAAATTGAATGCAGTTGTTAATGACTTCTGGGCAGAAATTTCCGAGTCCGTAGACAAAATAGAGGT
T
TTATACGAAGATGAAGGTTTCCGGAGTCGGCAGTTTGCAGCCTTAGTGGCATCTAAAGTATTTTATCAC
CTG
GGGGCTTTTGAGGAGTCTCTGAATTATGCTCTTGGAGCAGGGGACCTCTTCAATGTCAATGATAACT
CT
GAATATGTGGAAACTATTATAGCAAAATGCATTGATCACTACACCAAACAATGTGTGGAAAATGCAGA
T
TTGCCTGAAGGAGAAAAAAAACCAATTGACCAGAGATTGGAAGGCATCGTAAATAAAATGTTCCAGCGA
TGT
CTAGATGATCACAAGTATAAACAGGCTATTGGCATTGCTCTGGAGACACGAAGACTGGACGTCTTTG
AA
AAGACCATACTGGAGTCGAATGATGTCCCAGGAATGTTAGCTTATAGCCTTAAGCTCTGCATGTCTTT
A
ATGCAGAATAAACAGTTTCGGAATAAAGTACTAAGAGTTCTAGTTAAAATCTACATGAACTTGGAGAAA
CCT
GATTTCATCAATGTTTGTCAGTGCTTAATTTTCTTAGATGATCCTCAGGCTGTGAGTGATATCTTAG
AG
AAACTGGTAAAGGAAGACAACCTCCTGATGGCATATCAGATTTGTTTTGATTTGTATGAAAGTGCTAG
C
CAGCAGTTTTTGTCATCTGTAATCCAGAATCTTCGAACTGTTGGCACCCCTATTGCTTCTGTGCCTGGA
TCC
ACTAATACGGGTACTGTTCCGGGATCAGAGAAAGACAGTGACTCGATGGAAACAGAAGAAAAGACAA
GC
AGTGCATTTGTAGGAAAGACACCAGAAGCCAGTCCAGAGCCTAAGGACCAGACTTTGAAAATGATTAA
A
ATTTTAAGTGGTGAAATGGCTATTGAGTTACATCTGCAGTTCTTAATACGAAACAATAATACAGACCTC
ATG
ATTCTAAAAAACACAAAGGATGCAGTACGGAATTCTGTATGTCATACTGCAACCGTTATAGCAAACT
CT
TTTATGCACTGTGGGACAACCAGTGACCAGTTTCTTAGAGATAATTTGGAATGGTTAGCCAGAGCCAC
T
AACTGGGCAAAATTTACTGCTACAGCCAGTTTGGGTGTAATTCATAAGGGTCATGAAAAAGAAGCATTA
CAG
TTAATGGCAACATACCTTCCCAAGGATACTTCTCCAGGATCAGCCTATCAGGAAGGTGGAGGTCTCT
AT
GCACTAGGTCTTATTCATGCCAATCATGGTGGTGATATAATTGACTATCTGCTTAATCAGCTTAAGAA
C
GCCAGCAATGATATCGTTAGACACGGTGGCAGTCTGGGCCTTGGTTTGGCAGCCATGGGAACTGCACGT
CAA
GATGTTTATGATTTGCTAAAAACAAACCTTTATCAGGATGATGCAGTAACAGGGGAAGCAGCTGGCC
TG
GCCCTAGGTTTGGTTATGTTGGGCTCTAAAAATGCTCAGGCTATTGAGGACATGGTTGGTTATGCACA
A
GAAACTCAACATGAGAAGATTCTGCGTGGTCTTGCAGTTGGCATAGCTTTAGTAATGTATGGGAGGATG
GAA
GAGGCTGATGCTCTCATTGAATCTCTCTGTCGTGACAAGGACCCAATTCTTCGAAGGTCTGGAATGT
AT
ACTGTAGCCATGGCTTATTGTGGCTCTGGTAACAACAAAGCAATTCGACGCCTGCTACATGTTGCTGT
A
AGTGATGTTAATGATGATGTCAGGAGGGCAGCAGTAGAATCACTTGGGTTCATTCTATTCAGAACCCCT
GAA
CAGTGCCCAAGTGTTGTCTCTTTGTTGTCAGAGAGTTACAACCCTCATGTGCGCTACGGAGCTGCAA
TG
GCCTTGGGGATATGCTGTGCTGGTACAGGAAACAAGGAAGCCATTAATTTGCTAGAACCAATGACAAA
C
GACCCCGTGAACTACGTGAGGCAAGGGGCACTCATAGCTTCAGCTCTCATCATGATCCAGCAGACTGAA
ATC
ACTTGTCCAAAGGTGAATCAGTTCAGACAGCTGTATTCCAAAGTCATCAATGATAAGCATGATGATG
TC
ATGGCCAAGTTTGGCGCTATTCTGGCCCAGGGCATACTGGATGCAGGTGGTCATAATGTCACAATCTC
C
TTGCAGTCCAGGACTGGGCATACTCATATGCCTTCTGTGGTTGGCGTCCTTGTATTTACCCAGTTTTGG
TTC
TGGTTTCCTCTTTCACACTTCCTGTCATTGGCTTATACCCCTACCTGTGTCATTGGCCTTAACAAGG
AC
TTAAAGGTTTCTACTGCTGTATTATCTATAACTGCCAAGGCTAAAAAGAAGGAAAAAGAAAAGGAAAA
A
AAGGAGGAGGAGAAAATGGAAGTGGATGAGGCAGAGAAAAAGGAGGAAAAAGAGAAGAAAAAAGAACCT
GAG
CCAAACTTCCAGTTATTGGATAACCCAGCCCGAGTTATGCCTGCCCAGCTTAAGGTCCTAACCATGC
CG
GAGACCTGTAGATACCAGCCTTTCAAACCACTCTCTATTGGAGGCATCATCATTCTGAAGGATACCAG
T
GAAGACATTGAGGAGCTGGTGGAACCTGTGGCAGCACATGGCCCAAAAATCGAGGAGGAGGAACAAGAG
CCA
GAACCCCCAGAACCATTTGAGTATATTGATGATTAA


Translation (922 aa):
MITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAALVASKVFYH
L
GAFEESLNYALGAGDLFNVNDNSEYVETII
AKCIDHYTKQCVENADLPEGEKKPIDQRLEGIVNKMFQR
C
LDDHKYKQAIGIALETRRLDVFEKTILES
NDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEK
P
DFINVCQ
CLIFLDDPQAVSDILEKLVKEDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPG
S
TNTGTVPGSEKD
SDSMETEEKTSSAFVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDL
M
ILKNTK
DAVRNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL
Q
LMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASND
IVRHGGSLGLGLAAMGTAR
Q
DVYDLLKTNLYQDDAVT
GEAAGLALGLVMLGSKNAQAIEDMVGYAQETQHEKILRGLAVGIALVMYGRM
E
EADALIESLCRDK
DPILRRSGMYTVAMAYCGSGNNKAIRRLLHVAVSDVNDDVRRAAVESLGFILFRTP
E
QCPSVVSLLSESYNPHVRYGAAMALGICCAGTGNK
EAINLLEPMTNDPVNYVRQGALIASALIMIQQTE
I
TCPK
VNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFW
F
WFPLSHFLSLAYTPTCVIGLNKDLK
VSTAVLSITAKAKKKEKEKEKKEEEKMEVDEAEKKEEKEKKKEP
E
PNFQLLDNPARVMPAQLKVLTMPETCRYQPFKP
LSIGGIIILKDTSEDIEELVEPVAAHGPKIEEEEQE
P
EPPEPFEYIDD




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser