CCDS Report for Consensus CDS

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Report for CCDS54445.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
54445.1	Public	Homo sapiens	20	SLC4A11	24	110	108

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54445.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000380059.7	ENSP00000369399.3		Accepted	alive
		NCBI	NM_001174090.2	NP_001167561.1		Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001167561.1	918	Q8NBS3-4	918	100%	0	0

Chromosomal Locations for CCDS 54445.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)

Genome Browser links:

Chromosome	Start	Stop
20	3227787	3227856
20	3228259	3228428
20	3228512	3228707
20	3228838	3229011
20	3229095	3229263
20	3229346	3229452
20	3229524	3229776
20	3230187	3230260
20	3230515	3230647
20	3230732	3230845
20	3230933	3231058
20	3231149	3231242
20	3231330	3231548
20	3233514	3233637
20	3233921	3234002
20	3234083	3234314
20	3234568	3234617
20	3234742	3234894
20	3237544	3237588
20	3237893	3238064

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2757 nt):
ATGGGCGTTTATGGCCCCCAGGACCGGTCTGAGAGTGAGAAGAGGGATGTGCAGAGAGATCCCCCGCCTT GGCATCCGAGGAGAGAGGGGGAGAGGCCCGCTCGGGCCCGGTCCCTTCCTCTCGCTGCAGCGGGGCAGGG TTTTCTCAGGAAAACCTGGATTAGCGAACATGAAAACTCTCCCACCATGTCGCAGAATGGATACTTCGAG GATTCAAGCTACTACAAGTGTGACACAGATGACACCTTCGAAGCCCGAGAGGAGATCCTGGGGGATGAGG CCTTCGACACTGCCAACTCCTCCATCGTGTCTGGCGAGAGTATCCGTTTTTTTGTCAATGTCAACCTTGA GATGCAGGCCACCAACACTGAGAATGAAGCGACTTCCGGTGGCTGTGTGCTCCTGCACACCTCCCGAAAG TACCTGAAGTTAAAGAACTTCAAGGAAGAGATCCGTGCGCACCGCGACCTAGATGGCTTCCTGGCGCAGG CCAGCATCGTCCTGAACGAGACGGCCACCTCCCTGGATAACGTGCTGCGGACCATGCTTCGCCGCTTCGC CAGGGACCCTGACAACAATGAGCCCAACTGCAACCTGGACCTGCTCATGGCCATGCTCTTCACCGATGCC GGGGCACCCATGCGGGGTAAAGTCCACCTGCTGTCAGATACCATCCAAGGGGTCACCGCCACAGTGACAG GGGTGCGGTACCAGCAGTCGTGGCTCTGCATCATCTGTACCATGAAGGCCCTACAGAAGCGGCACGTGTG CATCAGCCGCCTGGTTCGCCCACAGAACTGGGGGGAGAATTCCTGTGAGGTTCGGTTCGTCATCCTGGTG CTGGCCCCACCCAAGATGAAAAGCACTAAGACTGCGATGGAGGTGGCGCGCACGTTTGCCACCATGTTCT CGGATATCGCCTTCCGCCAGAAGCTCCTGGAGACCCGCACAGAGGAGGAATTCAAGGAGGCCTTGGTGCA TCAGAGACAGCTGCTCACCATGGTGAGCCACGGTCCAGTGGCGCCGAGAACGAAGGAACGCAGCACAGTC TCCCTCCCTGCCCACAGACACCCAGAGCCCCCAAAGTGCAAGGACTTTGTCCCTTTTGGGAAGGGCATCC GGGAGGACATCGCACGCAGGTTCCCCTTGTACCCCTTGGACTTCACTGATGGCATTATTGGGAAAAACAA GGCTGTGGGCAAATACATCACCACCACCCTGTTCCTCTACTTCGCCTGCCTCCTGCCCACCATCGCTTTC GGGTCTCTCAATGACGAGAACACAGACGGGGCCATCGACGTGCAGAAGACCATAGCCGGGCAGAGCATCG GGGGCCTGCTCTACGCGCTCTTCTCTGGGCAGCCATTGGTGATTCTGCTGACCACCGCGCCCCTGGCGCT CTACATCCAGGTGATTCGTGTCATCTGTGATGACTATGACCTGGACTTCAACTCCTTCTACGCATGGACG GGCCTGTGGAATAGTTTCTTCCTTGCGCTTTATGCCTTTTTCAACCTCAGCCTGGTCATGAGTCTCTTCA AGAGGTCGACGGAGGAGATCATCGCCCTCTTCATTTCCATCACGTTTGTGCTGGATGCCGTCAAGGGCAC GGTTAAAATCTTCTGGAAGTACTACTATGGGCATTACTTGGACGACTATCACACAAAAAGGACTTCATCC CTTGTCAGCCTGTCAGGCCTCGGCGCCAGCCTCAACGCCAGCCTCCACACTGCCCTCAACGCCAGCTTCC TCGCCAGCCCCACGGAGCTGCCCTCGGCCACACACTCAGGCCAGGCGACCGCCGTGCTCAGCCTCCTCAT CATGCTGGGCACGCTCTGGCTGGGCTACACCCTCTACCAATTCAAGAAGAGCCCCTACCTGCACCCCTGC GTGCGAGAGATCCTGTCCGACTGCGCCCTGCCCATCGCGGTGCTCGCCTTCTCCCTCATCAGCTCCCATG GCTTCCGGGAAATCGAGATGAGCAAGTTCCGCTACAACCCCAGCGAGAGCCCCTTTGCGATGGCGCAGAT CCAGTCGCTGTCCCTGAGGGCCGTCAGCGGTGCCATGGGCCTCGGCTTCCTGCTGTCCATGCTCTTCTTC ATCGAGCAGAACTTGGTGGCCGCCTTGGTGAATGCACCGGAGAACAGGCTGGTGAAGGGCACTGCCTACC ACTGGGACCTCCTGCTCCTCGCCATCATCAACACAGGGCTGTCTCTGTTTGGGCTGCCTTGGATCCATGC CGCCTACCCCCACTCCCCGCTGCACGTGCGAGCCCTGGCCTTAGTGGAGGAGCGTGTGGAGAACGGACAC ATCTATGACACGATTGTGAACGTGAAGGAGACGCGGCTGACCTCGCTGGGCGCCAGCGTCCTGGTGGGCC TGTCCCTGTTGCTGCTGCCGGTCCCGCTTCAGTGGATCCCCAAGCCCGTGCTCTATGGCCTCTTCCTCTA CATCGCGCTCACCTCCCTCGATGGCAACCAGCTCGTCCAGCGCGTGGCCCTGCTGCTCAAGGAGCAGACT GCGTACCCCCCGACACACTACATCCGGAGGGTGCCCCAGAGGAAGATCCACTACTTCACGGGCCTGCAGG TGCTTCAGCTGCTGCTGCTGTGTGCCTTCGGCATGAGCTCCCTGCCCTACATGAAGATGATCTTTCCCCT CATCATGATCGCCATGATCCCCATCCGCTATATCCTGCTGCCCCGAATCATTGAAGCCAAGTACTTGGAT GTCATGGACGCTGAGCACAGGCCTTGA
Translation (918 aa):
MGVYGPQDRSESEKRDVQRDPPPWHPRREGERPARARSLPLAAAGQGFLRKTWISEHENSPTMSQNGYFE DSSYYKCDTDDTFEAREEILGDEAFDTANSSIVSGESIRFFVNVNLEMQATNTENEATSGGCVLLHTSRK YLKLKNFKEEIRAHRDLDGFLAQASIVLNETATSLDNVLRTMLRRFARDPDNNEPNCNLDLLMAMLFTDA GAPMRGKVHLLSDTIQGVTATVTGVRYQQSWLCIICTMKALQKRHVCISRLVRPQNWGENSCEVRFVILV LAPPKMKSTKTAMEVARTFATMFSDIAFRQKLLETRTEEEFKEALVHQRQLLTMVSHGPVAPRTKERSTV SLPAHRHPEPPKCKDFVPFGKGIREDIARRFPLYPLDFTDGIIGKNKAVGKYITTTLFLYFACLLPTIAF GSLNDENTDGAIDVQKTIAGQSIGGLLYALFSGQPLVILLTTAPLALYIQVIRVICDDYDLDFNSFYAWT GLWNSFFLALYAFFNLSLVMSLFKRSTEEIIALFISITFVLDAVKGTVKIFWKYYYGHYLDDYHTKRTSS LVSLSGLGASLNASLHTALNASFLASPTELPSATHSGQATAVLSLLIMLGTLWLGYTLYQFKKSPYLHPC VREILSDCALPIAVLAFSLISSHGFREIEMSKFRYNPSESPFAMAQIQSLSLRAVSGAMGLGFLLSMLFF IEQNLVAALVNAPENRLVKGTAYHWDLLLLAIINTGLSLFGLPWIHAAYPHSPLHVRALALVEERVENGH IYDTIVNVKETRLTSLGASVLVGLSLLLLPVPLQWIPKPVLYGLFLYIALTSLDGNQLVQRVALLLKEQT AYPPTHYIRRVPQRKIHYFTGLQVLQLLLLCAFGMSSLPYMKMIFPLIMIAMIPIRYILLPRIIEAKYLD VMDAEHRP

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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