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Report for CCDS54446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54446.1 Public Homo sapiens 20 SLC4A11 24 110 108 CCDS HistoryNCBI Gene:83959Re-query CCDS DB by CCDS ID:54446.1Re-query CCDS DB by GeneID:83959See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54446.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000642402.1 ENSP00000493503.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000642402.1Link to Ensembl Protein Viewer:ENSP00000493503.1Re-query CCDS DB by Nucleotide ID:ENST00000642402Re-query CCDS DB by Protein ID:ENSP00000493503
Original member Current member NCBI NM_001174089.2 NP_001167560.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001174089.2Link to Protein Sequence:NP_001167560.1Re-query CCDS DB by Nucleotide ID:NM_001174089Re-query CCDS DB by Protein ID:NP_001167560Link to BLAST:NP_001167560.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167560.1 875 Q8NBS3-3 875 100% 0 0

Chromosomal Locations for CCDS 54446.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 3227787 3227856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3228259 3228428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3228512 3228707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3228838 3229011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3229095 3229263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3229346 3229452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3229524 3229776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3230187 3230260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3230515 3230647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3230732 3230845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3230933 3231058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3231149 3231242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3231330 3231548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3233514 3233637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3233921 3234002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3234083 3234314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3234568 3234617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3234742 3234894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3237544 3237588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3239095 3239137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2628 nt):
ATGGCCGCGGCCACCAGGCGCGTGTTCCATCTGCAGCCGTGCGAAAACTCTCCCACCATGTCGCAGAATG
GATACTTCGAGGATTCAAGCTACTACAAGTGTGACACAGATGACACCTTCGAAGCCCGAGAGGAGATCCT
GGGGGATGAGGCCTTCGACACTGCCAACTCCTCCATCGTGTCTGGCGAGAGTATCCGTTTTTTTGTCAAT
GTCAACCTTGAGATGCAGGCCACCAACACTGAGAATGAAGCGACTTCCGGTGGCTGTGTGCTCCTGCACA
CCTCCCGAAAGTACCTGAAGTTAAAGAACTTCAAGGAAGAGATCCGTGCGCACCGCGACCTAGATGGCTT
CCTGGCGCAGGCCAGCATCGTCCTGAACGAGACGGCCACCTCCCTGGATAACGTGCTGCGGACCATGCTT
CGCCGCTTCGCCAGGGACCCTGACAACAATGAGCCCAACTGCAACCTGGACCTGCTCATGGCCATGCTCT
TCACCGATGCCGGGGCACCCATGCGGGGTAAAGTCCACCTGCTGTCAGATACCATCCAAGGGGTCACCGC
CACAGTGACAGGGGTGCGGTACCAGCAGTCGTGGCTCTGCATCATCTGTACCATGAAGGCCCTACAGAAG
CGGCACGTGTGCATCAGCCGCCTGGTTCGCCCACAGAACTGGGGGGAGAATTCCTGTGAGGTTCGGTTCG
TCATCCTGGTGCTGGCCCCACCCAAGATGAAAAGCACTAAGACTGCGATGGAGGTGGCGCGCACGTTTGC
CACCATGTTCTCGGATATCGCCTTCCGCCAGAAGCTCCTGGAGACCCGCACAGAGGAGGAATTCAAGGAG
GCCTTGGTGCATCAGAGACAGCTGCTCACCATGGTGAGCCACGGTCCAGTGGCGCCGAGAACGAAGGAAC
GCAGCACAGTCTCCCTCCCTGCCCACAGACACCCAGAGCCCCCAAAGTGCAAGGACTTTGTCCCTTTTGG
GAAGGGCATCCGGGAGGACATCGCACGCAGGTTCCCCTTGTACCCCTTGGACTTCACTGATGGCATTATT
GGGAAAAACAAGGCTGTGGGCAAATACATCACCACCACCCTGTTCCTCTACTTCGCCTGCCTCCTGCCCA
CCATCGCTTTCGGGTCTCTCAATGACGAGAACACAGACGGGGCCATCGACGTGCAGAAGACCATAGCCGG
GCAGAGCATCGGGGGCCTGCTCTACGCGCTCTTCTCTGGGCAGCCATTGGTGATTCTGCTGACCACCGCG
CCCCTGGCGCTCTACATCCAGGTGATTCGTGTCATCTGTGATGACTATGACCTGGACTTCAACTCCTTCT
ACGCATGGACGGGCCTGTGGAATAGTTTCTTCCTTGCGCTTTATGCCTTTTTCAACCTCAGCCTGGTCAT
GAGTCTCTTCAAGAGGTCGACGGAGGAGATCATCGCCCTCTTCATTTCCATCACGTTTGTGCTGGATGCC
GTCAAGGGCACGGTTAAAATCTTCTGGAAGTACTACTATGGGCATTACTTGGACGACTATCACACAAAAA
GGACTTCATCCCTTGTCAGCCTGTCAGGCCTCGGCGCCAGCCTCAACGCCAGCCTCCACACTGCCCTCAA
CGCCAGCTTCCTCGCCAGCCCCACGGAGCTGCCCTCGGCCACACACTCAGGCCAGGCGACCGCCGTGCTC
AGCCTCCTCATCATGCTGGGCACGCTCTGGCTGGGCTACACCCTCTACCAATTCAAGAAGAGCCCCTACC
TGCACCCCTGCGTGCGAGAGATCCTGTCCGACTGCGCCCTGCCCATCGCGGTGCTCGCCTTCTCCCTCAT
CAGCTCCCATGGCTTCCGGGAAATCGAGATGAGCAAGTTCCGCTACAACCCCAGCGAGAGCCCCTTTGCG
ATGGCGCAGATCCAGTCGCTGTCCCTGAGGGCCGTCAGCGGTGCCATGGGCCTCGGCTTCCTGCTGTCCA
TGCTCTTCTTCATCGAGCAGAACTTGGTGGCCGCCTTGGTGAATGCACCGGAGAACAGGCTGGTGAAGGG
CACTGCCTACCACTGGGACCTCCTGCTCCTCGCCATCATCAACACAGGGCTGTCTCTGTTTGGGCTGCCT
TGGATCCATGCCGCCTACCCCCACTCCCCGCTGCACGTGCGAGCCCTGGCCTTAGTGGAGGAGCGTGTGG
AGAACGGACACATCTATGACACGATTGTGAACGTGAAGGAGACGCGGCTGACCTCGCTGGGCGCCAGCGT
CCTGGTGGGCCTGTCCCTGTTGCTGCTGCCGGTCCCGCTTCAGTGGATCCCCAAGCCCGTGCTCTATGGC
CTCTTCCTCTACATCGCGCTCACCTCCCTCGATGGCAACCAGCTCGTCCAGCGCGTGGCCCTGCTGCTCA
AGGAGCAGACTGCGTACCCCCCGACACACTACATCCGGAGGGTGCCCCAGAGGAAGATCCACTACTTCAC
GGGCCTGCAGGTGCTTCAGCTGCTGCTGCTGTGTGCCTTCGGCATGAGCTCCCTGCCCTACATGAAGATG
ATCTTTCCCCTCATCATGATCGCCATGATCCCCATCCGCTATATCCTGCTGCCCCGAATCATTGAAGCCA
AGTACTTGGATGTCATGGACGCTGAGCACAGGCCTTGA

Translation (875 aa):
MAAATRRVFHLQPCENSPTMSQNGYFEDSSYYKCDTDDTFEAREEILGDEAFDTANSSIVSGESIRFFVN
VNLEMQATNTENEATSGGCVLLHTSRKYLKLKNFKEEIRAHRDLDGFLAQASIVLNETATSLDNVLRTML
RRFARDPDNNEPNCNLDLLMAMLFTDAGAPMRGKVHLLSDTIQGVTATVTGVRYQQSWLCIICTMKALQK
RHVCISRLVRPQNWGENSCEVRFVILVLAPPKMKSTKTAMEVARTFATMFSDIAFRQKLLETRTEEEFKE
ALVHQRQLLTMVSHGPVAPRTKERSTVSLPAHRHPEPPKCKDFVPFGKGIREDIARRFPLYPLDFTDGII
GKNKAVGKYITTTLFLYFACLLPTIAFGSLNDENTDGAIDVQKTIAGQSIGGLLYALFSGQPLVILLTTA
PLALYIQVIRVICDDYDLDFNSFYAWTGLWNSFFLALYAFFNLSLVMSLFKRSTEEIIALFISITFVLDA
VKGTVKIFWKYYYGHYLDDYHTKRTSSLVSLSGLGASLNASLHTALNASFLASPTELPSATHSGQATAVL
SLLIMLGTLWLGYTLYQFKKSPYLHPCVREILSDCALPIAVLAFSLISSHGFREIEMSKFRYNPSESPFA
MAQIQSLSLRAVSGAMGLGFLLSMLFFIEQNLVAALVNAPENRLVKGTAYHWDLLLLAIINTGLSLFGLP
WIHAAYPHSPLHVRALALVEERVENGHIYDTIVNVKETRLTSLGASVLVGLSLLLLPVPLQWIPKPVLYG
LFLYIALTSLDGNQLVQRVALLLKEQTAYPPTHYIRRVPQRKIHYFTGLQVLQLLLLCAFGMSSLPYMKM
IFPLIMIAMIPIRYILLPRIIEAKYLDVMDAEHRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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