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Report for CCDS54449.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54449.1 Public Homo sapiens 20 BANF2 24 110 108 CCDS HistoryNCBI Gene:140836Re-query CCDS DB by CCDS ID:54449.1Re-query CCDS DB by GeneID:140836See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54449.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000545418.2 ENSP00000439128.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545418.2Link to Ensembl Protein Viewer:ENSP00000439128.1Re-query CCDS DB by Nucleotide ID:ENST00000545418Re-query CCDS DB by Protein ID:ENSP00000439128
Original member Current member NCBI NM_001159495.2 NP_001152967.1 Accepted alive Link to Nucleotide Sequence:NM_001159495.2Link to Protein Sequence:NP_001152967.1Re-query CCDS DB by Nucleotide ID:NM_001159495Re-query CCDS DB by Protein ID:NP_001152967Link to BLAST:NP_001152967.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001152967.1 97 Q9H503-2 97 100% 0 0

Chromosomal Locations for CCDS 54449.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 17693689 17693706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 17725023 17725151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 17735665 17735811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGCTGCGAGGAACAAAGGAGATGGACAACATGTCTCCCAGGCTGAGAGCCTTCCTCTCCGAACCCATTG
GAGAAAAGGATGTCTGCTGGGTGGATGGCATCAGCCATGAGCTCGCGATCAATTTGGTCACCAAAGGTAT
CAATAAGGCCTACATCCTGCTGGGACAATTCCTTCTGATGCACAAGAATGAAGCCGAGTTTCAGAGGTGG
CTCATTTGCTGTTTTGGTGCCACTGAGTGTGAGGCCCAGCAGACTTCTCACTGCCTCAAGGAGTGGTGTG
CCTGCTTCCTGTAG

Translation (97 aa):
MLRGTKEMDNMSPRLRAFLSEPIGEKDVCWVDGISHELAINLVTKGINKAYILLGQFLLMHKNEAEFQRW
LICCFGATECEAQQTSHCLKEWCACFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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