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Report for CCDS54482.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54482.1 Public Homo sapiens 21 SCAF4 24 110 108 CCDS HistoryNCBI Gene:57466Re-query CCDS DB by CCDS ID:54482.1Re-query CCDS DB by GeneID:57466See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54482.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000434667.3 ENSP00000402377.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000434667.3Link to Ensembl Protein Viewer:ENSP00000402377.2Re-query CCDS DB by Nucleotide ID:ENST00000434667Re-query CCDS DB by Protein ID:ENSP00000402377
Original member Current member NCBI NM_001145444.1 NP_001138916.1 Accepted alive Link to Nucleotide Sequence:NM_001145444.1Link to Protein Sequence:NP_001138916.1Re-query CCDS DB by Nucleotide ID:NM_001145444Re-query CCDS DB by Protein ID:NP_001138916Link to BLAST:NP_001138916.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138916.1 1132 O95104-3 1132 100% 0 0

Chromosomal Locations for CCDS 54482.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 31671399 31672354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31685049 31685240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31685398 31685484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31685568 31685733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31688307 31688464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31690797 31690953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31691817 31691930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31692349 31692449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31693294 31693484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31694204 31694289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31694813 31694980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31696113 31696221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31696569 31696750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31700995 31701171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31701776 31701918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31702244 31702379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31703765 31703926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31706274 31706357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31731663 31731692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3399 nt):
ATGGACGCCGTCAACGCCTTCAACCAGGAGCTCTTTTCGCTTATGGATATGAAACCTCCCATCTCTAGAG
CCAAGATGATTCTCATCACTAAAGCTGCTATTAAAGCTATTAAGTGTAAACCAGAATACAAGGTTCCGGG
ATTATATGTAATTGACTCAATTGTGCGACAGTCTCGTCATCAGTTTGGAACTGATAAAGATGTTTTTGGG
CCAAGATTCTCTAAAAACATAACTGCCACATTCCAATATTTATATCTTTGTCCATCTGAAGATAAGAGTA
AAATAGTTCGTGTGCTGAACCTTTGGCAAAAAAATGGAGTGTTCAAAATTGAAATTATTCAACCTCTTTT
GGACATGGCAGCGGGAACCAGTAATGCAGCCCCAGTAGCAGAAAATGTTACCAATAATGAAGGCTCACCT
CCACCTCCAGTAAAAGTTTCTTCTGAACCTCCCACACAAGCCACTCCAAACTCCGTCCCAGCTGTACCAC
AGTTGCCCAGCTCTGATGCTTTTGCTGCTGTGGCTCAGCTGTTTCAGACAACTCAAGGCCAACAGCTTCA
GCAGATCCTTCAGACTTTTCAACAGCCTCCAAAACCACAGTCTCCTGCCCTTGACAATGCTGTGATGGCT
CAGGTTCAGGCTATCACAGCTCAGTTAAAGACAACTCCTACACAACCATCTGAACAAAAAGCTGCTTTCC
CCCCACCTGAACAGAAAACTGCATTTGACAAGAAGTTGCTTGATAGATTTGACTATGATGATGAGCCAGA
AGCTGTGGAAGAATCAAAGAAAGAGGATACCACTGCCGTCACCACGACAGCACCTGCTGCCGCAGTACCC
CCTGCACCCACCGCCACCGTGCCTGCTGCTGCTGCACCCGCTGCTGCCTCTCCTCCTCCTCCACAGGCAC
CATTTGGCTTTCCTGGAGATGGCATGCAGCAGCCAGCATACACACAGCATCAAAATATGGATCAGTTTCA
GCCACGAATGATGGGAATACAACAGGATCCAATGCACCATCAGGTTCCACTTCCTCCTAATGGACAAATG
CCAGGATTTGGACTTCTTCCTACACCTCCATTTCCTCCCATGGCTCAGCCTGTGATTCCTCCAACTCCAC
CAGTGCAGCAGCCTTTCCAAGCTTCTTTTCAGGCACAAAATGAACCACTTACACAGAAGCCGCATCAGCA
GGAAATGGAAGTAGAACAACCTTGTATTCAAGAGGTTAAGCGACATATGTCTGATAACAGAAAGTCAAGA
TCTAGGTCAGCATCCAGGTCACCAAAAAGGAGGCGATCTAGATCTGGTTCTAGATCTCGAAGGTCTCGGC
ATCGACGTTCTCGATCTCGGTCCAGGGATAGACGCCGACATTCTCCCCGATCTCGATCTCAAGAAAGACG
GGATCGAGAAAAAGAGAGAGAACGTCGACAAAAAGGCCTCCCTCAAGTGAAACCGGAAACTGCAAGTGTT
TGCAGTACTACCCTCTGGGTGGGGCAGCTGGACAAAAGAACTACTCAGCAGGATGTTGCCAGTCTCTTGG
AAGAGTTTGGTCCAATTGAATCAATTAATATGATTCCTCCCAGGGGTTGTGCCTATATTGTTATGGTTCA
TAGGCAAGATGCCTATCGTGCCCTGCAGAAACTGAGCCGAGGAAACTATAAAGTGAACCAGAAATCCATA
AAGATTGCCTGGGCCTTAAACAAAGGAATAAAGGCAGATTATAAGCAGTATTGGGATGTAGAACTTGGTG
TTACTTATATTCCATGGGACAAAGTCAAGCCTGAGGAACTGGAGAGTTTTTGTGAAGGAGGAATGTTGGA
CAGTGACACACTTAACCCAGATTGGAAAGGAATTCCTAAGAAGCCTGAAAATGAAGTTGCTCAAAATGGA
GGTGCTGAAACCTCACACACAGAACCAGTATCACCCATACCTAAACCATTACCTGTGCCTGTCCCTCCTA
TTCCTGTTCCTGCACCTATAACAGTGCCACCTCCACAGGTCCCACCACATCAACCGGGTCCACCTGTAGT
TGGTGCTCTCCAGCCGCCTGCTTTCACGCCTCCTCTGGGAATACCGCCTCCAGGCTTTGGTCCTGGTGTT
CCTCCTCCCCCTCCTCCTCCACCATTTTTGCGCCCAGGATTCAACCCAATGCATTTACCACCAGGTTTTC
TGCCTCCTGGACCCCCACCTCCTATAACTCCACCAGTATCCATTCCTCCTCCTCACACTCCACCAATAAG
CATCCCAAACTCTACTATCGCTGGTATAAATGAAGACACTACAAAAGACTTATCTATTGGAAATCCCATT
CCAACAGTGGTGTCTGGGGCTAGAGGAAACGCCGAGTCTGGTGACAGCGTGAAAATGTATGGCTCTGCCG
TGCCACCTGCTGCACCCACGAATCTGCCCACCCCTCCTGTAACCCAGCCTGTTTCACTTCTTGGCACTCA
AGGAGTTGCCCCTGGTCCTGTAATTGGACTTCAGGCACCATCTACTGGTCTTCTTGGCGCCCGGCCCGGT
CTCATCCCACTCCAGCGCCCTCCAGGAATGCCCCCACCTCACTTACAGCGGTTCCCTTTGATGCCGCCCC
GTCCCATGCCACCGCACATGATGCACAGAGGCCCACCGCCAGGACCAGGGGGCTTTGCGATGCCTCCACC
TCATGGAATGAAAGGTCCCTTCCCACCGCATGGCCCCTTTGTTAGGCCTGGTGGAATGCCAGGGCTCGGG
GGCCCAGGGCCAGGCCCAGGGGGTCCTGAAGACAGAGACGGAAGGCAACAGCCGCCGCAGCAGCCACAGC
AGCAGCCACAGCCGCAGGCGCCCCAGCAACCACAGCAGCAGCAGCAGCAGCAGCCACCACCATCACAACA
GCCTCCACCAACACAGCAGCAGCCACAGCAGTTTAGAAATGATAACAGGCAGCAGTTCAATTCAGGTAGA
GACCAAGAAAGGTTTGGAAGAAGATCTTTTGGAAATAGGGTGGAAAATGACCGGGAACGGTATGGGAACC
GTAATGATGATAGAGATAATAGTAACCGTGACAGGAGAGAGTGGGGAAGGAGGAGCCCTGACCGGGACAG
GCACAGAGACTTGGAAGAGAGAAATAGACGCTCTAGTGGGCATCGAGACAGAGAGAGAGATTCTAGAGAT
AGAGAGTCTCGTAGAGAGAAGGAAGAAGCCCGAGGAAAGGAAAAGCCTGAGGTGACAGACAGGGCAGGTG
GTAACAAAACCGTTGAACCTCCCATTAGCCAAGTGGGAAATGTAGACACTGCTTCAGAACTTGAGAAGGG
GGTGTCTGAGGCTGCAGTCCTAAAGCCTTCTGAAGAGTTACCTGCTGAGGCTACCTCATCCGTTGAACCC
GAAAAGGATTCTGGCTCAGCAGCAGAGGCTCCTCGTTAG

Translation (1132 aa):
MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFG
PRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAAPVAENVTNNEGSP
PPPVKVSSEPPTQATPNSVPAVPQLPSSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPALDNAVMA
QVQAITAQLKTTPTQPSEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAVEESKKEDTTAVTTTAPAAAVP
PAPTATVPAAAAPAAASPPPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMGIQQDPMHHQVPLPPNGQM
PGFGLLPTPPFPPMAQPVIPPTPPVQQPFQASFQAQNEPLTQKPHQQEMEVEQPCIQEVKRHMSDNRKSR
SRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGLPQVKPETASV
CSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSI
KIAWALNKGIKADYKQYWDVELGVTYIPWDKVKPEELESFCEGGMLDSDTLNPDWKGIPKKPENEVAQNG
GAETSHTEPVSPIPKPLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGV
PPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAGINEDTTKDLSIGNPI
PTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGARPG
LIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRGPPPGPGGFAMPPPHGMKGPFPPHGPFVRPGGMPGLG
GPGPGPGGPEDRDGRQQPPQQPQQQPQPQAPQQPQQQQQQQPPPSQQPPPTQQQPQQFRNDNRQQFNSGR
DQERFGRRSFGNRVENDRERYGNRNDDRDNSNRDRREWGRRSPDRDRHRDLEERNRRSSGHRDRERDSRD
RESRREKEEARGKEKPEVTDRAGGNKTVEPPISQVGNVDTASELEKGVSEAAVLKPSEELPAEATSSVEP
EKDSGSAAEAPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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