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Report for CCDS54564.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
54564.1 |
Public |
Homo sapiens |
3 |
GOLGA4 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:2803](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:54564.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:2803](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 3 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 54564.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000356847.8 |
ENSP00000349305.4 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000356847.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000349305.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000356847](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000349305](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001172713.2 |
NP_001166184.1 |
|
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001172713.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001166184.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001172713](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001166184](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001172713.3 |
NP_001166184.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001172713.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001166184.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001172713](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001166184](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001166184.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001166184.1 |
2243 |
Q13439-5 |
2243 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 54564.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (6732 nt): ATGTTCAAGAAACTGAAGCAAAAGATCAGCGAGGAGCAGCAGCAGCTCCAGCAGGCGCTGGCTCCTGCTC AGGCGTCCTCCAATTCTTCAACACCAACAAGAATGAGGAGCAGGACATCTTCATTTACAGAGCAACTTGA TGAAGGTACACCCAATAGAGAGAATGCATCTACTCATGCCTCGAAATCTCCTGACAGTGTTAATGGAAGT GAACCAAGCATTCCTCAGTCAGGTGACACACAGTCTTTTGCACAGAAGCTCCAGCTCCGGGTGCCCTCCG TGGAGTCTTTGTTTCGAAGTCCGATAAAGGAATCTCTATTCCGGTCTTCTTCTAAAGAGTCTTTGGTACG AACATCTTCCAGAGAATCCCTGAATCGACTTGACCTGGACAGTTCTACTGCCAGTTTTGATCCACCCTCT GATATGGATAGCGAGGCTGAAGACTTGGTAGGGAATTCAGACAGTCTCAACAAAGAACAGTTGATTCAGC GGTTGCGAAGAATGGAACGAAGCTTAAGTAGCTACAGGGGAAAATATTCTGAGCTTGTTACAGCTTATCA GATGCTTCAGAGAGAGAAGAAAAAGCTACAAGGTATATTAAGTCAGAGTCAGGATAAATCACTTCGGAGA ATAGCAGAATTAAGAGAGGAGCTCCAAATGGACCAGCAGGCAAAGAAACATCTGCAAGAGGAGTTTGATG CATCTTTAGAGGAGAAAGATCAGTATATCAGTGTTCTCCAAACTCAGGTTTCTCTACTGAAACAACGATT ACGAAATGGCCCGATGAATGTTGATGTACTGAAACCACTTCCTCAGCTGGAACCACAGGCTGAAGTCTTC ACTAAAGAAGAGAATCCAGAAAGTGATGGAGAGCCAGTAGTGGAAGATGGAACTTCTGTAAAAACACTGG AAACACTCCAGCAAAGAGTGAAGCGTCAAGAGAACCTACTTAAGCGTTGTAAGGAAACAATTCAGTCACA TAAGGAACAATGTACACTATTAACTAGTGAAAAAGAAGCTCTGCAAGAACAACTGGATGAAAGACTTCAA GAACTAGAAAAGATAAAGGACCTTCATATGGCCGAGAAGACTAAACTTATCACTCAGTTGCGTGATGCAA AGAACTTAATTGAACAGCTTGAACAAGATAAGGGAATGGTAATCGCAGAGACAAAACGTCAGATGCATGA AACCCTGGAAATGAAAGAAGAAGAAATTGCTCAACTCCGTAGTCGCATCAAACAGATGACTACCCAGGGA GAGGAATTACGGGAACAGAAAGAAAAGTCCGAAAGAGCTGCTTTTGAGGAACTTGAAAAAGCTTTGAGTA CAGCCCAAAAAACAGAGGAAGCACGGAGAAAACTGAAGGCAGAAATGGATGAACAAATAAAAACTATCGA AAAAACAAGTGAGGAGGAACGCATCAGTCTTCAACAGGAATTAAGTCGGGTGAAACAGGAGGTTGTTGAT GTAATGAAAAAATCCTCAGAAGAACAAATTGCTAAGCTACAGAAGCTTCATGAAAAGGAGCTGGCCAGAA AAGAGCAGGAACTGACCAAGAAGCTTCAGACCCGAGAAAGGGAATTTCAGGAACAAATGAAAGTAGCTCT TGAAAAGAGTCAATCAGAATATTTGAAGATCAGCCAAGAAAAAGAACAGCAAGAATCTTTGGCCCTAGAA GAGTTAGAGTTGCAGAAAAAAGCAATCCTCACAGAAAGTGAAAATAAACTTCGGGACCTTCAGCAAGAAG CAGAGACTTACAGAACTAGAATTCTTGAATTGGAAAGTTCTTTGGAAAAAAGCTTACAAGAAAACAAAAA TCAGTCAAAAGATTTGGCTGTTCATCTGGAAGCTGAAAAAAATAAGCACAATAAGGAGATTACAGTCATG GTTGAAAAACACAAGACAGAATTGGAAAGCCTTAAGCATCAGCAGGATGCCCTTTGGACTGAAAAACTCC AAGTCTTAAAGCAACAATATCAGACTGAAATGGAAAAACTTAGGGAAAAGTGTGAACAAGAAAAAGAAAC ATTGTTGAAAGACAAAGAGATTATCTTCCAGGCCCACATAGAAGAAATGAATGAAAAGACTTTAGAAAAG CTTGATGTGAAGCAAACAGAACTAGAATCATTATCTTCTGAACTGTCAGAAGTATTAAAAGCCCGTCACA AACTAGAAGAGGAACTTTCTGTTCTGAAAGATCAAACAGATAAAATGAAGCAGGAATTAGAGGCCAAGAT GGATGAACAGAAAAATCATCACCAGCAGCAAGTTGACAGTATCATTAAAGAACACGAGGTATCTATCCAG AGGACTGAGAAGGCATTAAAAGATCAAATTAATCAACTTGAGCTTCTCTTGAAGGAAAGGGACAAGCATT TGAAAGAGCATCAGGCTCATGTAGAAAATTTAGAGGCAGATATTAAAAGGTCTGAAGGGGAACTCCAGCA GGCATCTGCTAAGCTGGACGTTTTTCAGTCTTACCAGAGTGCCACACATGAGCAGACAAAAGCATATGAG GAACAGTTGGCCCAATTGCAGCAGAAGTTGTTGGATTTGGAAACAGAAAGAATTCTTCTTACCAAACAGG TTGCTGAAGTTGAAGCACAAAAGAAAGATGTTTGTACTGAGTTAGATGCTCACAAAATCCAGGTGCAGGA CTTAATGCAGCAACTTGAAAAACAAAATAGTGAAATGGAGCAAAAAGTAAAATCTTTAACCCAAGTCTAT GAGTCCAAACTTGAAGATGGTAACAAAGAACAGGAACAGACAAAGCAAATCTTGGTGGAAAAGGAAAATA TGATTTTACAAATGAGAGAAGGACAGAAGAAAGAAATTGAGATACTCACACAGAAATTGTCAGCCAAGGA GGACAGTATTCATATTTTGAATGAGGAATATGAAACCAAATTTAAAAACCAAGAAAAAAAGATGGAAAAA GTTAAGCAGAAAGCAAAGGAGATGCAAGAAACGTTAAAGAAAAAATTACTGGATCAGGAAGCCAAACTTA AGAAAGAGCTTGAAAATACTGCTCTAGAGCTTAGTCAGAAAGAAAAACAGTTTAATGCCAAAATGCTGGA AATGGCACAGGCTAACTCAGCTGGAATCAGTGATGCAGTGTCAAGACTGGAAACAAACCAAAAAGAACAA ATAGAAAGTCTTACTGAGGTTCATCGACGAGAACTCAATGATGTCATATCAATCTGGGAAAAGAAACTTA ATCAGCAAGCTGAAGAACTTCAGGAAATACATGAAATCCAATTACAGGAAAAAGAACAAGAGGTAGCAGA ACTGAAACAAAAGATCCTCCTATTTGGGTGTGAAAAAGAAGAGATGAACAAGGAAATAACATGGCTGAAG GAAGAAGGTGTTAAGCAGGATACAACATTAAATGAATTACAGGAACAGTTAAAGCAGAAGTCTGCCCATG TGAATTCTCTTGCACAAGATGAAACTAAACTGAAAGCTCATCTTGAAAAGCTAGAGGTTGACTTGAATAA GTCTCTGAAGGAAAATACTTTTCTTCAAGAGCAGCTAGTTGAACTGAAGATGCTGGCAGAAGAAGATAAG CGGAAGGTTTCTGAGTTGACTAGCAAGTTGAAAACCACAGATGAAGAATTCCAGAGTTTGAAATCTTCAC ATGAAAAAAGTAACAAAAGCCTAGAGGACAAGAGCTTGGAATTTAAAAAACTGTCTGAGGAACTAGCGAT TCAGCTAGATATTTGCTGTAAGAAAACCGAAGCCTTATTAGAAGCTAAAACAAATGAGCTAATCAACATT AGTAGTAGTAAAACTAATGCCATTCTTTCTAGGATTTCTCATTGTCAGCACCGTACAACTAAAGTTAAGG AGGCACTGTTAATTAAAACTTGCACAGTTTCTGAATTAGAAGCACAACTTAGACAGTTGACAGAGGAGCA AAATACACTAAATATTTCTTTTCAACAGGCTACTCATCAGTTAGAAGAAAAAGAAAATCAAATTAAGAGC ATGAAGGCTGATATTGAAAGTCTTGTAACAGAAAAAGAAGCCTTACAGAAGGAAGGAGGCAATCAGCAAC AGGCTGCTTCTGAAAAGGAGTCTTGTATAACACAGTTGAAGAAAGAGTTATCTGAAAACATCAATGCTGT CACATTGATGAAAGAAGAGCTTAAAGAAAAAAAAGTTGAGATTAGCAGTCTTAGTAAACAACTAACTGAT TTGAATGTTCAGCTTCAAAATAGCATCAGCCTATCCGAAAAAGAAGCAGCCATTTCATCACTAAGAAAGC AGTATGATGAAGAAAAATGTGAATTGCTGGATCAGGTGCAAGATTTATCTTTTAAAGTTGACACTCTGAG TAAAGAGAAAATTTCTGCTCTTGAGCAGGTAGATGACTGGTCCAATAAATTCTCAGAATGGAAGAAGAAA GCACAGTCAAGATTTACACAGCATCAAAACACTGTTAAAGAATTGCAGATCCAGCTTGAGTTAAAATCAA AGGAAGCTTATGAAAAGGATGAGCAGATAAATTTATTGAAGGAAGAGCTTGATCAGCAAAATAAAAGATT TGATTGTTTAAAGGGTGAAATGGAAGACGACAAGAGCAAGATGGAGAAAAAGGAGTCTAATTTAGAAACA GAGTTAAAGTCTCAAACAGCAAGAATTATGGAATTAGAGGACCATATTACCCAGAAAACTATTGAAATAG AGTCCTTAAATGAAGTTCTTAAAAATTACAATCAACAAAAGGATATTGAACACAAAGAATTGGTTCAGAA ACTTCAACATTTTCAAGAGTTAGGAGAAGAAAAGGACAACAGGGTTAAAGAAGCTGAAGAAAAAATCTTA ACACTTGAAAACCAAGTTTATTCCATGAAAGCTGAACTTGAAACTAAGAAGAAAGAATTAGAACATGTGA ATTTAAGTGTGAAAAGCAAAGAGGAGGAGTTAAAGGCATTGGAAGATAGGCTTGAGTCAGAAAGTGCTGC AAAATTAGCAGAGTTGAAGAGAAAAGCTGAACAAAAAATTGCTGCCATTAAGAAGCAGTTGTTATCTCAA ATGGAAGAGAAAGAAGAACAGTATAAAAAAGGTACAGAAAGCCATTTGAGTGAGCTAAATACAAAATTGC AGGAAAGAGAAAGGGAAGTTCACATCTTGGAAGAAAAACTTAAGTCAGTGGAAAGTTCACAGTCAGAAAC ATTAATTGTACCCAGATCAGCAAAAAATGTGGCAGCATATACTGAACAAGAAGAAGCAGATTCCCAAGGC TGTGTGCAGAAGACATATGAAGAAAAAATCAGTGTTTTACAAAGAAACTTAACTGAAAAAGAAAAGCTAT TGCAGAGGGTAGGGCAGGAAAAAGAAGAGACAGTTTCTTCTCATTTTGAAATGCGATGCCAATACCAGGA GCGCTTAATAAAGCTAGAACATGCTGAGGCAAAGCAACATGAAGATCAAAGTATGATAGGTCATCTTCAA GAGGAGCTTGAAGAAAAAAACAAGAAATATTCCTTGATAGTAGCCCAGCATGTGGAAAAAGAAGGAGGTA AAAATAACATACAGGCAAAGCAAAACTTGGAAAATGTGTTTGACGACGTCCAGAAAACCCTCCAGGAGAA GGAACTAACCTGTCAGATTTTGGAGCAAAAGATAAAAGAGCTGGATTCCTGCTTAGTAAGACAGAAAGAA GTACATAGAGTTGAAATGGAAGAGTTGACCTCAAAATATGAAAAATTACAGGCTTTACAACAGATGGATG GAAGAAATAAACCCACAGAACTTTTGGAAGAAAACACTGAAGAAAAGTCCAAATCACATTTGGTCCAACC CAAATTGCTTAGTAACATGGAAGCCCAGCACAATGATCTGGAGTTTAAATTAGCCGGGGCAGAACGGGAG AAACAGAAACTGGGCAAGGAGATTGTTAGATTGCAGAAAGACCTTCGAATGTTGAGAAAGGAGCATCAGC AAGAATTGGAAATACTAAAGAAAGAATATGATCAAGAAAGGGAAGAGAAAATCAAACAGGAGCAGGAAGA TCTTGAACTGAAGCACAATTCCACATTAAAACAGCTGATGAGGGAGTTTAATACACAGCTGGCACAAAAG GAACAAGAGCTGGAAATGACCATAAAAGAAACTATCAATAAGGCCCAGGAGGTGGAGGCTGAACTTTTAG AAAGCCATCAAGAAGAGACAAATCAGTTACTTAAAAAAATTGCTGAGAAAGATGATGATCTAAAACGAAC AGCCAAAAGATATGAAGAAATCCTTGATGCTCGTGAAGAAGAAATGACTGCAAAAGTAAGGGACCTGCAG ACTCAACTTGAGGAGCTGCAGAAGAAATACCAGCAAAAGCTAGAGCAGGAGGAGAACCCTGGCAATGATA ATACACAGCTAGCACAGAAGACGACTTTAATCAGTGATTCGAAATTGAAAGAGCAAGAGTTCAGAGAACA GATTCACAATTTAGAAGACCGTTTGAAGAAATATGAAAAGAATGTATATGCAACAACTGTGGGGACACCT TACAAAGGTGGCAATTTGTACCATACGGATGTCTCACTCTTTGGAGAACCTACCGAATTTGAGTATTTGC GAAAAGTGCTTTTTGAGTATATGATGGGTCGTGAGACTAAGACCATGGCAAAAGTTATAACCACCGTACT GAAGTTCCCTGATGATCAGACTCAGAAAATTTTGGAAAGAGAAGATGCTCGGCTGATGTCATGGCTCCGA TCTTCATCTTGA
Translation (2243 aa): MFKKLKQKISEEQQQLQQALAPAQASSNSSTPTRMRSRTSSFTEQLDEGTPNRENASTHASKSPDSVNGS EPSIPQSGDTQSFAQKLQLRVPSVESLFRSPIKESLFRSSSKESLVRTSSRESLNRLDLDSSTASFDPPS DMDSEAEDLVGNSDSLNKEQLIQRLRRMERSLSSYRGKYSELVTAYQMLQREKKKLQGILSQSQDKSLRR IAELREELQMDQQAKKHLQEEFDASLEEKDQYISVLQTQVSLLKQRLRNGPMNVDVLKPLPQLEPQAEVF TKEENPESDGEPVVEDGTSVKTLETLQQRVKRQENLLKRCKETIQSHKEQCTLLTSEKEALQEQLDERLQ ELEKIKDLHMAEKTKLITQLRDAKNLIEQLEQDKGMVIAETKRQMHETLEMKEEEIAQLRSRIKQMTTQG EELREQKEKSERAAFEELEKALSTAQKTEEARRKLKAEMDEQIKTIEKTSEEERISLQQELSRVKQEVVD VMKKSSEEQIAKLQKLHEKELARKEQELTKKLQTREREFQEQMKVALEKSQSEYLKISQEKEQQESLALE ELELQKKAILTESENKLRDLQQEAETYRTRILELESSLEKSLQENKNQSKDLAVHLEAEKNKHNKEITVM VEKHKTELESLKHQQDALWTEKLQVLKQQYQTEMEKLREKCEQEKETLLKDKEIIFQAHIEEMNEKTLEK LDVKQTELESLSSELSEVLKARHKLEEELSVLKDQTDKMKQELEAKMDEQKNHHQQQVDSIIKEHEVSIQ RTEKALKDQINQLELLLKERDKHLKEHQAHVENLEADIKRSEGELQQASAKLDVFQSYQSATHEQTKAYE EQLAQLQQKLLDLETERILLTKQVAEVEAQKKDVCTELDAHKIQVQDLMQQLEKQNSEMEQKVKSLTQVY ESKLEDGNKEQEQTKQILVEKENMILQMREGQKKEIEILTQKLSAKEDSIHILNEEYETKFKNQEKKMEK VKQKAKEMQETLKKKLLDQEAKLKKELENTALELSQKEKQFNAKMLEMAQANSAGISDAVSRLETNQKEQ IESLTEVHRRELNDVISIWEKKLNQQAEELQEIHEIQLQEKEQEVAELKQKILLFGCEKEEMNKEITWLK EEGVKQDTTLNELQEQLKQKSAHVNSLAQDETKLKAHLEKLEVDLNKSLKENTFLQEQLVELKMLAEEDK RKVSELTSKLKTTDEEFQSLKSSHEKSNKSLEDKSLEFKKLSEELAIQLDICCKKTEALLEAKTNELINI SSSKTNAILSRISHCQHRTTKVKEALLIKTCTVSELEAQLRQLTEEQNTLNISFQQATHQLEEKENQIKS MKADIESLVTEKEALQKEGGNQQQAASEKESCITQLKKELSENINAVTLMKEELKEKKVEISSLSKQLTD LNVQLQNSISLSEKEAAISSLRKQYDEEKCELLDQVQDLSFKVDTLSKEKISALEQVDDWSNKFSEWKKK AQSRFTQHQNTVKELQIQLELKSKEAYEKDEQINLLKEELDQQNKRFDCLKGEMEDDKSKMEKKESNLET ELKSQTARIMELEDHITQKTIEIESLNEVLKNYNQQKDIEHKELVQKLQHFQELGEEKDNRVKEAEEKIL TLENQVYSMKAELETKKKELEHVNLSVKSKEEELKALEDRLESESAAKLAELKRKAEQKIAAIKKQLLSQ MEEKEEQYKKGTESHLSELNTKLQEREREVHILEEKLKSVESSQSETLIVPRSAKNVAAYTEQEEADSQG CVQKTYEEKISVLQRNLTEKEKLLQRVGQEKEETVSSHFEMRCQYQERLIKLEHAEAKQHEDQSMIGHLQ EELEEKNKKYSLIVAQHVEKEGGKNNIQAKQNLENVFDDVQKTLQEKELTCQILEQKIKELDSCLVRQKE VHRVEMEELTSKYEKLQALQQMDGRNKPTELLEENTEEKSKSHLVQPKLLSNMEAQHNDLEFKLAGAERE KQKLGKEIVRLQKDLRMLRKEHQQELEILKKEYDQEREEKIKQEQEDLELKHNSTLKQLMREFNTQLAQK EQELEMTIKETINKAQEVEAELLESHQEETNQLLKKIAEKDDDLKRTAKRYEEILDAREEEMTAKVRDLQ TQLEELQKKYQQKLEQEENPGNDNTQLAQKTTLISDSKLKEQEFREQIHNLEDRLKKYEKNVYATTVGTP YKGGNLYHTDVSLFGEPTEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQTQKILEREDARLMSWLR SSS
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