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Report for CCDS54596.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54596.1 Public Homo sapiens 3 ITIH4 24 110 108 CCDS HistoryNCBI Gene:3700Re-query CCDS DB by CCDS ID:54596.1Re-query CCDS DB by GeneID:3700See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54596.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000406595.5 ENSP00000384425.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406595.5Link to Ensembl Protein Viewer:ENSP00000384425.1Re-query CCDS DB by Nucleotide ID:ENST00000406595Re-query CCDS DB by Protein ID:ENSP00000384425
Original member Current member NCBI NM_001166449.2 NP_001159921.1 Accepted alive Link to Nucleotide Sequence:NM_001166449.2Link to Protein Sequence:NP_001159921.1Re-query CCDS DB by Nucleotide ID:NM_001166449Re-query CCDS DB by Protein ID:NP_001159921Link to BLAST:NP_001159921.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159921.1 900 Q14624-3 900 100% 0 0

Chromosomal Locations for CCDS 54596.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 52813421 52813490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52813975 52814071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52814209 52814363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52816884 52817058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52818052 52818168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52818257 52818283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52818462 52818536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52819393 52819518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52820291 52820317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52820631 52820785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52820991 52821130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52823556 52823741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52823823 52824004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52824190 52824315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52824397 52824565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52824842 52824958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52825886 52826014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52826541 52826651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52826791 52826953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52827093 52827197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52829119 52829279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52830553 52830642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2703 nt):
ATGAAGCCCCCAAGGCCTGTCCGTACCTGCAGCAAAGTTCTCGTCCTGCTTTCACTGCTGGCCATCCACC
AGACTACTACTGCCGAAAAGAATGGCATCGACATCTACAGCCTCACCGTGGACTCCAGGGTCTCATCCCG
ATTTGCCCACACGGTCGTCACCAGCCGAGTGGTCAATAGGGCCAATACTGTGCAGGAGGCCACCTTCCAG
ATGGAGCTGCCCAAGAAAGCCTTCATCACCAACTTCTCCATGATCATCGATGGCATGACCTACCCAGGGA
TCATCAAGGAGAAGGCTGAAGCCCAGGCACAGTACAGCGCAGCAGTGGCCAAGGGAAAGAGCGCTGGCCT
CGTCAAGGCCACCGGGAGAAACATGGAGCAGTTCCAGGTGTCGGTCAGTGTGGCTCCCAATGCCAAGATC
ACCTTTGAGCTGGTCTATGAGGAGCTGCTCAAGCGGCGTTTGGGGGTGTACGAGCTGCTGCTGAAAGTGC
GGCCCCAGCAGCTGGTCAAGCACCTGCAGATGGACATTCACATCTTCGAGCCCCAGGGCATCAGCTTTCT
GGAGACAGAGAGCACCTTCATGACCAACCAGCTGGTAGACGCCCTCACCACCTGGCAGAATAAGACCAAG
GCTCACATCCGGTTCAAGCCAACACTTTCCCAGCAGCAAAAGTCCCCAGAGCAGCAAGAAACAGTCCTGG
ACGGCAACCTCATTATCCGCTATGATGTGGACCGGGCCATCTCCGGGGGCTCCATTCAGATCGAGAACGG
CTACTTTGTACACTACTTTGCCCCCGAGGGCCTAACCACAATGCCCAAGAATGTGGTCTTTGTCATTGAC
AAGAGCGGCTCCATGAGTGGCAGGAAAATCCAGCAGACCCGGGAAGCCCTAATCAAGATCCTGGATGACC
TCAGCCCCAGAGACCAGTTCAACCTCATCGTCTTCAGTACAGAAGCAACTCAGTGGAGGCCATCACTGGT
GCCAGCCTCAGCCGAGAACGTGAACAAGGCCAGGAGCTTTGCTGCGGGCATCCAGGCCCTGGGAGGGACC
AACATCAATGATGCAATGCTGATGGCTGTGCAGTTGCTGGACAGCAGCAACCAGGAGGAGCGGCTGCCCG
AAGGGAGTGTCTCACTCATCATCCTGCTCACCGATGGCGACCCCACTGTGGGGGAGACTAACCCCAGGAG
CATCCAGAATAACGTGCGGGAAGCTGTAAGTGGCCGGTACAGCCTCTTCTGCCTGGGCTTCGGTTTCGAC
GTCAGCTATGCCTTCCTGGAGAAGCTGGCACTGGACAATGGCGGCCTGGCCCGGCGCATCCATGAGGACT
CAGACTCTGCCCTGCAGCTCCAGGACTTCTACCAGGAAGTGGCCAACCCACTGCTGACAGCAGTGACCTT
CGAGTACCCAAGCAATGCCGTGGAGGAGGTCACTCAGAACAACTTCCGGCTCCTCTTCAAGGGCTCAGAG
ATGGTGGTGGCTGGGAAGCTCCAGGACCGGGGGCCTGATGTGCTCACAGCCACAGTCAGTGGGAAGCTGC
CTACACAGAACATCACTTTCCAAACGGAGTCCAGTGTGGCAGAGCAGGAGGCGGAGTTCCAGAGCCCCAA
GTATATCTTCCACAACTTCATGGAGAGGCTCTGGGCATACCTGACTATCCAGCAGCTGCTGGAGCAAACT
GTCTCCGCATCCGATGCTGATCAGCAGGCCCTCCGGAACCAAGCGCTGAATTTATCACTTGCCTACAGCT
TTGTCACGCCTCTCACATCTATGGTAGTCACCAAACCCGATGACCAAGAGCAGTCTCAAGTTGCTGAGAA
GCCCATGGAAGGCGAAAGTAGAAACAGGAATGTCCACTCAGCTGGAGCTGCTGGCTCCCGGATGAATTTC
AGACCTGGGGTTCTCAGCTCCAGGCAACTTGGACTCCCAGGACCTCCTGATGTTCCTGACCATGCTGCTT
ACCACCCCTTCCGCCGTCTGGCCATCTTGCCTGCTTCAGCACCACCAGCCACCTCAAATCCTGATCCAGC
TGTGTCTCGTGTCATGAATATGAAAATCGAAGAAACAACCATGACAACCCAAACCCCAGCCCCCATACAG
GCTCCCTCTGCCATCCTGCCACTGCCTGGGCAGAGTGTGGAGCGGCTCTGTGTGGACCCCAGACACCGCC
AGGGGCCAGTGAACCTGCTCTCAGACCCTGAGCAAGGGGTTGAGGTGACTGGCCAGTATGAGAGGGAGAA
GGCTGGGTTCTCATGGATCGAAGTGACCTTCAAGAACCCCCTGGTATGGGTTCACGCATCCCCTGAACAC
GTGGTGGTGACTCGGAACCGAAGAAGCTCTGCGTACAAGTGGAAGGAGACGCTATTCTCAGTGATGCCCG
GCCTGAAGATGACCATGGACAAGACGGGTCTCCTGCTGCTCAGTGACCCAGACAAAGTGACCATCGGCCT
GTTGTTCTGGGATGGCCGTGGGGAGGGGCTCCGGCTCCTTCTGCGTGACACTGACCGCTTCTCCAGCCAC
GTTGGAGGGACCCTTGGCCAGTTTTACCAGGAGGTGCTCTGGGGATCTCCAGCAGCATCAGATGACGGCA
GACGCACGCTGAGGGTTCAGGGCAATGACCACTCTGCCACCAGAGAGCGCAGGCTGGATTACCAGGAGGG
GCCCCCGGGAGTGGAGATTTCCTGCTGGTCTGTGGAGCTGTAG

Translation (900 aa):
MKPPRPVRTCSKVLVLLSLLAIHQTTTAEKNGIDIYSLTVDSRVSSRFAHTVVTSRVVNRANTVQEATFQ
MELPKKAFITNFSMIIDGMTYPGIIKEKAEAQAQYSAAVAKGKSAGLVKATGRNMEQFQVSVSVAPNAKI
TFELVYEELLKRRLGVYELLLKVRPQQLVKHLQMDIHIFEPQGISFLETESTFMTNQLVDALTTWQNKTK
AHIRFKPTLSQQQKSPEQQETVLDGNLIIRYDVDRAISGGSIQIENGYFVHYFAPEGLTTMPKNVVFVID
KSGSMSGRKIQQTREALIKILDDLSPRDQFNLIVFSTEATQWRPSLVPASAENVNKARSFAAGIQALGGT
NINDAMLMAVQLLDSSNQEERLPEGSVSLIILLTDGDPTVGETNPRSIQNNVREAVSGRYSLFCLGFGFD
VSYAFLEKLALDNGGLARRIHEDSDSALQLQDFYQEVANPLLTAVTFEYPSNAVEEVTQNNFRLLFKGSE
MVVAGKLQDRGPDVLTATVSGKLPTQNITFQTESSVAEQEAEFQSPKYIFHNFMERLWAYLTIQQLLEQT
VSASDADQQALRNQALNLSLAYSFVTPLTSMVVTKPDDQEQSQVAEKPMEGESRNRNVHSAGAAGSRMNF
RPGVLSSRQLGLPGPPDVPDHAAYHPFRRLAILPASAPPATSNPDPAVSRVMNMKIEETTMTTQTPAPIQ
APSAILPLPGQSVERLCVDPRHRQGPVNLLSDPEQGVEVTGQYEREKAGFSWIEVTFKNPLVWVHASPEH
VVVTRNRRSSAYKWKETLFSVMPGLKMTMDKTGLLLLSDPDKVTIGLLFWDGRGEGLRLLLRDTDRFSSH
VGGTLGQFYQEVLWGSPAASDDGRRTLRVQGNDHSATRERRLDYQEGPPGVEISCWSVEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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