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Report for CCDS54645.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54645.1 Public Homo sapiens 3 DZIP1L 24 110 108 CCDS HistoryNCBI Gene:199221Re-query CCDS DB by CCDS ID:54645.1Re-query CCDS DB by GeneID:199221See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54645.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000469243.5 ENSP00000419486.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000469243.5Link to Ensembl Protein Viewer:ENSP00000419486.1Re-query CCDS DB by Nucleotide ID:ENST00000469243Re-query CCDS DB by Protein ID:ENSP00000419486
Original member Current member NCBI NM_001170538.1 NP_001164009.1 Accepted alive Link to Nucleotide Sequence:NM_001170538.1Link to Protein Sequence:NP_001164009.1Re-query CCDS DB by Nucleotide ID:NM_001170538Re-query CCDS DB by Protein ID:NP_001164009Link to BLAST:NP_001164009.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164009.1 539 Q8IYY4-2 539 100% 0 0

Chromosomal Locations for CCDS 54645.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 138069160 138069164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138071643 138071835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138077499 138077632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138080567 138080620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138081734 138081764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138084113 138084253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138086961 138087023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138088379 138088507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138092383 138092544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138094862 138094983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138097763 138097847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138103471 138103971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGCAGTCCCCAGCTGCCACTGCTGAGGGCCTCAGTGGCCCCCTCTTTGGGGCCTACACGTTCCCCACCT
TCAAGTTTCAGCCTCGCCATGATAGCATGGACTGGAGACGCATTAGCACCCTGGATGTAGACCGCGTGGC
CCGGGAACTGGATGTGGCCACTCTGCAGGAGAATATTGCTGGCATCACCTTCTGCAACTTGGACCGGGAG
GTGTGCAGCCGCTGTGGGCAGCCTGTGGACCCGGCACTGCTCAAGGTGCTGCGCCTGGCGCAGCTCATCA
TTGAGTACCTGCTGCACTGCCAGGATTGCCTGAGTGCCAGTGTTGCCCAGCTGGAGGCACGGCTGCAGAC
CAGCCTGGGCCAGCAGCAGCGTGGTCAGCAGGAGCTGGGACGCCAGGCTGACGAGCTCAAGGGTGTGCGG
GAGGAGAGCCGCCGGCGTCGCAAGATGATCAGCACCCTGCAGCAGCTGCTAATGCAGACAGGCACCCACA
GCTACCACACGTGCCACCTGTGTGACAAGACATTCATGAATGCCACCTTTCTCCGGGGCCACATCCAGCG
CAGGCATGCAGGCGTGGCAGAAGGTGGAAAACAGAAGAAACAGGAACAGCCAGTGGAAGAGGTGTTAGAA
GAGCTACGGGCCAAGCTAAAGTGGACCCAAGGGGAGCTGGAAGCCCAGAGGGAGGCGGAGAGGCAGCGGC
AGCTCCAGGAAGCAGAGCTCATTCATCAGAGGGAAATAGAAGCTAAGAAAGAATTTGATAAATGGAAAGA
GCAAGAGTGGACCAAACTTTATGGGGAAATAGATAAACTAAAAAAATTATTTTGGGATGAATTTAAAAAT
GTCGCCAAGCAGAACTCTACACTAGAAGAGAAACTGCGGGCACTGCAGTCCCACAGTGTGATGGAGTCCA
AGCTGGGATCACTGCGAGATGAGGAGTCAGAGGAGTGGCTTCGGCAGGCACGGGAGCTTCAGGCCCTGAG
AGAGAAGACAGAAATTCAGAAAACGGAGTGGAAAAGAAAAGTGAAGGAACTGCATGAAGAGCACATGGCT
GAGAAGAAAGAGCTACAGGAGGAGAACCAGAGGCTCCAGGCCTCCCTGTCTCAGGATCAGAAGAAGGCAG
CTGCCCAGTCCCAGTGCCAGATCAGCACCCTCCGTGCCCAGCTGCAGGAACAAGCTAGGATCATTGCCTC
CCAGGAGGAGATGATCCAGTCCTTGTCTCTCAGGAAGGTGGAAGGGATCCACAAGGTGCCAAAGGCTGTG
GACACAGAGGAGGACTCTCCAGAGGAAGAGATGGAGGACTCCCAGGATGAACAGCACAAGGTGCTGGCAG
CTCTGAGGCGTAACCCCACTTTGCTGAAGCACTTCAGACCAATCCTGGAGGACACCCTGGAAGAGAAGCT
CGAAAGCATGGGGATAAGGAAGGATGCAAAGGGAATCTCGATTCAGACTCTCAGACACCTGGAATCCCTG
CTGAGAGTCCAGCGGGAGCAGAAGGCCCGGAAGTTTTCTGAATTTCTGAGTCTGAGGGGAAAGCTTGTCA
AGGAAGTCACCAGCAGAGCGAAGGAGAGACAGGAGAATGGCGCTGTGGTGTCCCAGCCAGACGGGCAGCC
TTCAGGCTGA

Translation (539 aa):
MQSPAATAEGLSGPLFGAYTFPTFKFQPRHDSMDWRRISTLDVDRVARELDVATLQENIAGITFCNLDRE
VCSRCGQPVDPALLKVLRLAQLIIEYLLHCQDCLSASVAQLEARLQTSLGQQQRGQQELGRQADELKGVR
EESRRRRKMISTLQQLLMQTGTHSYHTCHLCDKTFMNATFLRGHIQRRHAGVAEGGKQKKQEQPVEEVLE
ELRAKLKWTQGELEAQREAERQRQLQEAELIHQREIEAKKEFDKWKEQEWTKLYGEIDKLKKLFWDEFKN
VAKQNSTLEEKLRALQSHSVMESKLGSLRDEESEEWLRQARELQALREKTEIQKTEWKRKVKELHEEHMA
EKKELQEENQRLQASLSQDQKKAAAQSQCQISTLRAQLQEQARIIASQEEMIQSLSLRKVEGIHKVPKAV
DTEEDSPEEEMEDSQDEQHKVLAALRRNPTLLKHFRPILEDTLEEKLESMGIRKDAKGISIQTLRHLESL
LRVQREQKARKFSEFLSLRGKLVKEVTSRAKERQENGAVVSQPDGQPSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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