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Report for CCDS54648.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54648.1 Public Homo sapiens 3 TFDP2 24 110 108 CCDS HistoryNCBI Gene:7029Re-query CCDS DB by CCDS ID:54648.1Re-query CCDS DB by GeneID:7029See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 54648.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000499676.5 ENSP00000439782.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000499676.5Link to Ensembl Protein Viewer:ENSP00000439782.2Re-query CCDS DB by Nucleotide ID:ENST00000499676Re-query CCDS DB by Protein ID:ENSP00000439782
Original member Current member NCBI NM_001178140.2 NP_001171611.1 Accepted alive Link to Nucleotide Sequence:NM_001178140.2Link to Protein Sequence:NP_001171611.1Re-query CCDS DB by Nucleotide ID:NM_001178140Re-query CCDS DB by Protein ID:NP_001171611Link to BLAST:NP_001171611.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171611.1 418 Q14188-8 418 100% 0 0

Chromosomal Locations for CCDS 54648.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 141952513 141952696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141952911 141953016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141959674 141959840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141963812 141963963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141970073 141970141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141974048 141974191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141978520 141978682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141993538 141993585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141995020 141995141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142000252 142000353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGCAACCAGAAGGCATCATCTTTGAAGCAGAGAATAAACCCTCACCAGGCACTGAATCTGCCGGCACTT
TCATTTTGGACCTCTCAGCAACCTCCAGAACAATTATAAGCACACCACAGAGACTAACCAGTTCAGGAAG
TGTTCTGATTGGGAGTCCATATACCCCTGCACCAGCAATGGTTACTCAGACACACATAGCAGAAGCTACT
GGCTGGGTCCCTGGTGATAGAAAACGGGCTAGAAAATTTATAGACTCTGATTTTTCAGAAAGTAAACGAA
GCAAAAAAGGAGATAAAAATGGGAAAGGCTTGAGACACTTTTCAATGAAAGTGTGTGAGAAAGTTCAACG
AAAAGGTACAACATCGTACAATGAAGTCGCTGATGAGCTGGTGTCAGAGTTCACCAATTCAAATAACCAT
TTGGCTGCTGATTCGGCTTATGATCAGAAGAACATTAGGCGAAGAGTTTATGATGCTTTAAATGTGCTAA
TGGCAATGAACATAATTTCAAAGGAAAAAAAAGAAATCAAGTGGATTGGCCTGCCTACCAATTCTGCTCA
GGAATGTCAGAATCTGGAGATAGAGAAGCAGAGGCGGATAGAACGGATAAAGCAGAAGCGGGCCCAGCTG
CAAGAACTTCTCCTACAGCAAATCGCTTTCAAAAACCTGGTACAGAGAAATCGACAAAATGAGCAGCAAA
ACCAGGGCCCGCCGGCTCTGAACTCTACCATTCAGCTGCCATTCATAATCATCAATACAAGCAGAAAAAC
AGTCATAGATTGCAGCATCTCCAGTGACAAGTTTGAGTATCTTTTCAATTTTGACAACACCTTTGAGATC
CATGATGACATAGAAGTACTAAAGCGGATGGGAATGTCGTTTGGCCTGGAGTCAGGCAAATGCTCTCTGG
AGGATCTGAAACTTGCGAAATCCCTGGTGCCAAAGGCTTTAGAAGGTTATATCACAGATATCTCCACAGG
ACCTTCTTGGTTAAATCAGGGACTACTTCTGAACTCTACCCAATCAGTTTCAAATTTAGACCTGACCACT
GGTGCCACCTTACCCCAGTCAAGTGTAAACCAAGGGTTATGCTTGGATGCAGAAGTGGCCTTAGCAACTG
GGCAGTTCCTGGCCCCAAACAGTCACCAGTCCAGCAGTGCGGCCTCTCACTGCTCCGAGTCCCGAGGCGA
GACCCCCTGTTCGTTCAATGATGAAGATGAGGAAGATGATGAGGAGGATTCCTCCTCCCCAGAATAA

Translation (418 aa):
MQPEGIIFEAENKPSPGTESAGTFILDLSATSRTIISTPQRLTSSGSVLIGSPYTPAPAMVTQTHIAEAT
GWVPGDRKRARKFIDSDFSESKRSKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNH
LAADSAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQL
QELLLQQIAFKNLVQRNRQNEQQNQGPPALNSTIQLPFIIINTSRKTVIDCSISSDKFEYLFNFDNTFEI
HDDIEVLKRMGMSFGLESGKCSLEDLKLAKSLVPKALEGYITDISTGPSWLNQGLLLNSTQSVSNLDLTT
GATLPQSSVNQGLCLDAEVALATGQFLAPNSHQSSSAASHCSESRGETPCSFNDEDEEDDEEDSSSPE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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