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Report for CCDS54653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54653.1 Public Homo sapiens 3 ZIC4 24 110 108 CCDS HistoryNCBI Gene:84107Re-query CCDS DB by CCDS ID:54653.1Re-query CCDS DB by GeneID:84107See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 54653.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000425731.7 ENSP00000397695.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000425731.7Link to Ensembl Protein Viewer:ENSP00000397695.3Re-query CCDS DB by Nucleotide ID:ENST00000425731Re-query CCDS DB by Protein ID:ENSP00000397695
Original member Current member NCBI NM_001168379.2 NP_001161851.1 Accepted alive Link to Nucleotide Sequence:NM_001168379.2Link to Protein Sequence:NP_001161851.1Re-query CCDS DB by Nucleotide ID:NM_001168379Re-query CCDS DB by Protein ID:NP_001161851Link to BLAST:NP_001161851.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161851.1 372 Q8N9L1-5 372 100% 0 0

Chromosomal Locations for CCDS 54653.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 147388859 147388859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 147390931 147391246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 147395852 147396469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 147402728 147402812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 147405373 147405471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGAATGGCCCATGTCAAAGTCTTAGGAAAGCGGAGGGGCTTTTGGAGGGTTGCACTTCGGCCGTCACCG
TCTTCAGGAAACTCCCTTTGGATTCCAAGGCTCAAAGTCAGAAAATGAGATACAAGACATCCTTGGTGAT
GAGGAAACGATTACGGCTTTACCGAAACACTCTTAAAGAGTCAAGTAGCAGCTCTGGACACCATGGCCCC
CAGCTCACCGCCGCCTCCAGCCCCTCGGTGTTCCCGGGCCTCCACGAGGAGCCTCCCCAGGCCTCCCCCA
GCCGTCCTTTGAATGGACTCCTGCGTCTGGGGCTCCCTGGAGACATGTACGCGCGGCCGGAGCCCTTCCC
GCCAGGGCCTGCGGCCCGCAGCGACGCCCTGGCAGCTGCCGCAGCCCTGCATGGCTACGGGGGCATGAAC
CTGACGGTGAACCTCGCTGCGCCCCACGGTCCTGGCGCTTTCTTCCGCTACATGCGCCAGCCCATCAAAC
AGGAGCTCATCTGCAAGTGGCTGGCGGCCGACGGCACCGCGACCCCGAGCCTCTGCTCCAAAACTTTCAG
CACCATGCACGAGCTGGTCACGCACGTCACCGTGGAGCACGTCGGCGGCCCGGAACAGGCCAACCACATT
TGCTTCTGGGAGGAGTGTCCGCGCCAGGGAAAGCCCTTCAAAGCCAAATACAAACTTGTAAATCACATCC
GCGTGCACACGGGCGAGAAGCCCTTCCCTTGTCCTTTCCCGGGGTGTGGGAAGGTCTTTGCTAGATCAGA
AAATCTCAAAATACACAAACGAACTCACACAGGCGAGAAGCCCTTCAGATGCGAGTTCGAGGGCTGCGAG
CGGCGCTTCGCCAACAGCAGCGACCGTAAGAAGCATTCGCACGTGCACACTAGCGACAAGCCATACACGT
GCAAGGTGCGGGGCTGCGACAAGTGCTACACGCACCCCAGCTCGCTGCGTAAGCACATGAAGGTGCACGG
GCGCTCGCCGCCGCCCAGCTCTGGCTACGATTCGGCTACACCGTCTGCCCTCGTGTCGCCCTCGTCGGAC
TGCGGCCACAAGTCCCAGGTGGCCTCCTCGGCGGCGGTGGCGGCGCGTACCGCCGACTTGAGCGAATGA

Translation (372 aa):
MNGPCQSLRKAEGLLEGCTSAVTVFRKLPLDSKAQSQKMRYKTSLVMRKRLRLYRNTLKESSSSSGHHGP
QLTAASSPSVFPGLHEEPPQASPSRPLNGLLRLGLPGDMYARPEPFPPGPAARSDALAAAAALHGYGGMN
LTVNLAAPHGPGAFFRYMRQPIKQELICKWLAADGTATPSLCSKTFSTMHELVTHVTVEHVGGPEQANHI
CFWEECPRQGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFRCEFEGCE
RRFANSSDRKKHSHVHTSDKPYTCKVRGCDKCYTHPSSLRKHMKVHGRSPPPSSGYDSATPSALVSPSSD
CGHKSQVASSAAVAARTADLSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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