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Report for CCDS54709.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54709.1 Public Homo sapiens 4 ZFYVE28 24 110 108 CCDS HistoryNCBI Gene:57732Re-query CCDS DB by CCDS ID:54709.1Re-query CCDS DB by GeneID:57732See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54709.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000515169.5 ENSP00000425766.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515169.5Link to Ensembl Protein Viewer:ENSP00000425766.1Re-query CCDS DB by Nucleotide ID:ENST00000515169Re-query CCDS DB by Protein ID:ENSP00000425766
Original member Current member NCBI NM_001172660.3 NP_001166131.1 Accepted alive Link to Nucleotide Sequence:NM_001172660.3Link to Protein Sequence:NP_001166131.1Re-query CCDS DB by Nucleotide ID:NM_001172660Re-query CCDS DB by Protein ID:NP_001166131Link to BLAST:NP_001166131.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166131.1 163 Q9HCC9-8 163 100% 0 0

Chromosomal Locations for CCDS 54709.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 2329142 2329142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2335705 2335794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2337407 2337496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2339453 2339655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2341478 2341585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGGATGAGTGCATCCCCCAGGACCGCGCCCCCAGAGATTTCTGCGTCAAGTTCCCTGAGGAGATCCGGC
ACGACAACCTGGCCGGCCAGCTGTGGTTCGGTGCCGAGTGCCTGGCCGCCGGCTCCATCATCATGAACCG
GGAGCTGGAGAGCATGGCCATGCGCCCGCTGGCCAAGGAGCTGACGCGCAGCCTGGAGGACGTGCGGGGC
GCCCTCCGTGACCAGGCGCTGCGGGACCTGAACACCTACACAGAGAAGATGAGGGAAGCGCTGAGGCACT
TCGACGTCCTGTTCGCAGAGTTTGAGCTCAGCTACGTCTCGGCCATGGTGCCTGTGAAGTCCCCCAGGGA
GTACTACGTGCAGCAGGAGGTCATCGTGCTCTTCTGCGAGACGGTGGAGAGGGCCCTGGACTTCGGGTAC
CTGACTCAGGACATGATTGATGACTACGAGCCGGCCCTCATGTTCAGCATCCCCAGGCTGGCCATCGTGT
GA

Translation (163 aa):
MDECIPQDRAPRDFCVKFPEEIRHDNLAGQLWFGAECLAAGSIIMNRELESMAMRPLAKELTRSLEDVRG
ALRDQALRDLNTYTEKMREALRHFDVLFAEFELSYVSAMVPVKSPREYYVQQEVIVLFCETVERALDFGY
LTQDMIDDYEPALMFSIPRLAIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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