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Report for CCDS54711.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54711.1 Public Homo sapiens 4 ZFYVE28 24 110 108 CCDS HistoryNCBI Gene:57732Re-query CCDS DB by CCDS ID:54711.1Re-query CCDS DB by GeneID:57732See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54711.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000511071.5 ENSP00000425706.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511071.5Link to Ensembl Protein Viewer:ENSP00000425706.1Re-query CCDS DB by Nucleotide ID:ENST00000511071Re-query CCDS DB by Protein ID:ENSP00000425706
Original member Current member NCBI NM_001172656.2 NP_001166127.1 Accepted alive Link to Nucleotide Sequence:NM_001172656.2Link to Protein Sequence:NP_001166127.1Re-query CCDS DB by Nucleotide ID:NM_001172656Re-query CCDS DB by Protein ID:NP_001166127Link to BLAST:NP_001166127.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166127.1 857 Q9HCC9-2 857 100% 0 0

Chromosomal Locations for CCDS 54711.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 2270725 2270856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2271311 2271414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2271675 2271779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2273173 2273289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2274062 2274216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2304289 2305536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2320170 2320271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2337407 2337496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2339453 2339655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2341478 2341615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2353933 2354073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2418285 2418323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2574 nt):
ATGATGAACAGGTTCCGAAAGTGGCTCTACAAACCCAAGAGGTCGGATCCGCAGCTGCTTGCCCGGTTCT
ACTATGCCGACGAGGAGCTGAACCAGGTGGCCGCGGAGCTGGACAGCCTGGATGGGCGGAAGGACCCCCA
GCGGTGCACGCTGCTGGTCAGCCAGTTCCGCTCCTGTCAGGACAATGTGTTGAACATCATTAACCAGATC
ATGGATGAGTGCATCCCCCAGGACCGCGCCCCCAGAGATTTCTGCGTCAAGTTCCCTGAGGAGATCCGGC
ACGACAACCTGGCCGGCCAGCTGTGGTTCGGTGCCGAGTGCCTGGCCGCCGGCTCCATCATCATGAACCG
GGAGCTGGAGAGCATGGCCATGCGCCCGCTGGCCAAGGAGCTGACGCGCAGCCTGGAGGACGTGCGGGGC
GCCCTCCGTGACCAGGCGCTGCGGGACCTGAACACCTACACAGAGAAGATGAGGGAAGCGCTGAGGCACT
TCGACGTCCTGTTCGCAGAGTTTGAGCTCAGCTACGTCTCGGCCATGGTGCCTGTGAAGTCCCCCAGGGA
GTACTACGTGCAGCAGGAGGTCATCGTGCTCTTCTGCGAGACGGTGGAGAGTGGCCTCGTGGTCTATGCG
GACGGACCTCTGAACTTGGACCGCAAGGTGGAAGACATGTCCGAGCTGTTCCGGCCCTTCCACACGTTGC
TGCGGAAAATAAGGGATTTGCTGCAGACGCTGACGGAGGAGGAGCTGCACACGCTGGAACGGAACCTCTG
CATTTCCCAAGACGTGGAGTTCCCCATCCGCGCAGACGTGCAGGGACCCGCTGCCCTGGCGCCTGCCCTC
TCTGCCCCTCTCCCCCCTGAGGGGCCACTCTCAGCTAAGGCCAAAGACCCGGATGCAGAGCTGGCCTGCT
CCATGCAGTACGACGACCAGGAGCTGGAGCAGCTCAGCCGCATGGTCCACAGGGCGGGGGACGAGATGTC
CTCTTTGCTTTCACCGCCCATTGCCTGCCAGTCCCCAGCTCACAGGCCAGGAGCGGAGGGCAGCCCAGGC
GGGGAGGCCTCTCCAGGTAGACCGCGCCTGCGGTCAGGCAGTGACGAGGAGGAGCGCGTGTTCTTCATGG
ATGACGTGGAGGGGACGGCAGAAGCCCTGGCCAGGCCCGAGTCCCCAGCTGGCCCATTTGGGTGGGCAGG
CAGTACCTGGGCCGACCCCCAGGAGAAAGGGCAGGGTGGGCCAGGCGGAGCGGCGGGGATCAGCTTGCCC
GCCTCGGAAAAGGAGGAGGACTTGAGCAACAACAATCTCGAGGCCGAGGGCACAGATGGGGCCAGCCTCG
CGGGCACCAGCTCCTGCAGCTGCCTGGACTCGCGGCTGCACCTGGACGGCTGGGAGGTGGGTGCGGATGA
CGCAGAGACGGCTGAGATGATCGCCCACCGGACAGGGGGCATGAAGCTCTCAGCCACGGTCATCTTCAAC
CCCAAATCGCCCACTTCCCTGGACTCTGCGGTCGCCACCCAGGAGGCCGCCTCGGAGCCCGTGGCCGAGG
GGATGGATGGCGGCCCCCACAAGCTTAGCACTGGGGCCACCAACTGCCTTCTGCATTCCTGCGTGTGCTG
TGGGAGCTGCGGGGACAGCAGGGAGGACGTGGTGGAGCGTCTGCGGGAGAAGTGCAGCCCGGGAGGCGTC
ATTGGTGCCTCGTACGCTGCCGGCTTAGCCAAGGCCAGCGACAGGGCCCCTGAGAGACAGGAGGAGGCGC
CCCCACCCTCAGAAGATGCCTCCAACGGGCGGGAGCCCAAAGCCCCCACTTCCGACAAGTGCCTGCCTCA
CACCTCAGGTTCCCAGGTGGACACAGCGAGTGGGCTGCAAGGAGAGGCTGGGGTTGCAGGTCAGCAGGAG
CCAGAGGCCAGAGAGCTGCATGCTGGGAGCCCCTCGGCTCACGAGGCGCCTCAGGCCCTGTCGGGCTCCA
GCAGCTCCACAGCTGGGTCCTGCTCCTCAGACAAGATGGGGCCAGAGGCGGCCCCAGCAGCCACGCATGC
TGCCCCACAGGCCACAAGAGAGAAGATCCGGTCCAGGTTCCACGGCAGCCACGACCTCATCCACCGCCTG
TTCGTCTGCATTTCAGGTGTGGCTGACCAGCTGCAGACGAACTATGCCAGTGACCTGAGAAGTATTCTTA
AAACACTGTTTGAGGTCATGGCCACCAAGCCTGAAACAGACGACAAGGAAAAGTTAAGGAAGGTCACCCA
GACTCTGCGGAGTGCGGCCTTGGAGGACTGTGCACTGTGCCAGGAGACCCTGTCATCCTCTGAACTGGCA
GCCAAGACCCGCGATGGGGACTTTGAAGACCCCCCGGAGTGGGTGCCAGACGAGGCCTGTGGCTTCTGCA
CGGCGTGCAAAGCACCCTTCACCGTCATCCGCCGGAAGCACCACTGCCGCAGCTGTGGGAAGATCTTCTG
CTCGCGCTGCTCCTCGCACTCAGCACCGCTGCCCCGCTACGGGCAGGTGAAGCCGGTCCGAGTGTGCACC
CACTGCTACATGTTCCATGTCACGCCCTTCTACAGCGACAAGGCCGGCCTGTGA

Translation (857 aa):
MMNRFRKWLYKPKRSDPQLLARFYYADEELNQVAAELDSLDGRKDPQRCTLLVSQFRSCQDNVLNIINQI
MDECIPQDRAPRDFCVKFPEEIRHDNLAGQLWFGAECLAAGSIIMNRELESMAMRPLAKELTRSLEDVRG
ALRDQALRDLNTYTEKMREALRHFDVLFAEFELSYVSAMVPVKSPREYYVQQEVIVLFCETVESGLVVYA
DGPLNLDRKVEDMSELFRPFHTLLRKIRDLLQTLTEEELHTLERNLCISQDVEFPIRADVQGPAALAPAL
SAPLPPEGPLSAKAKDPDAELACSMQYDDQELEQLSRMVHRAGDEMSSLLSPPIACQSPAHRPGAEGSPG
GEASPGRPRLRSGSDEEERVFFMDDVEGTAEALARPESPAGPFGWAGSTWADPQEKGQGGPGGAAGISLP
ASEKEEDLSNNNLEAEGTDGASLAGTSSCSCLDSRLHLDGWEVGADDAETAEMIAHRTGGMKLSATVIFN
PKSPTSLDSAVATQEAASEPVAEGMDGGPHKLSTGATNCLLHSCVCCGSCGDSREDVVERLREKCSPGGV
IGASYAAGLAKASDRAPERQEEAPPPSEDASNGREPKAPTSDKCLPHTSGSQVDTASGLQGEAGVAGQQE
PEARELHAGSPSAHEAPQALSGSSSSTAGSCSSDKMGPEAAPAATHAAPQATREKIRSRFHGSHDLIHRL
FVCISGVADQLQTNYASDLRSILKTLFEVMATKPETDDKEKLRKVTQTLRSAALEDCALCQETLSSSELA
AKTRDGDFEDPPEWVPDEACGFCTACKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQVKPVRVCT
HCYMFHVTPFYSDKAGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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