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Report for CCDS54808.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54808.1 Public Homo sapiens 4 FREM3 24 110 108 CCDS HistoryNCBI Gene:166752Re-query CCDS DB by CCDS ID:54808.1Re-query CCDS DB by GeneID:166752See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54808.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329798.5 ENSP00000332886.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000329798.5Link to Ensembl Protein Viewer:ENSP00000332886.5Re-query CCDS DB by Nucleotide ID:ENST00000329798Re-query CCDS DB by Protein ID:ENSP00000332886
Original member Current member NCBI NM_001168235.2 NP_001161707.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001168235.2Link to Protein Sequence:NP_001161707.1Re-query CCDS DB by Nucleotide ID:NM_001168235Re-query CCDS DB by Protein ID:NP_001161707Link to BLAST:NP_001161707.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161707.1 2139 P0C091 2139 100% 0 0

Chromosomal Locations for CCDS 54808.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 143577611 143577852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143585844 143585993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143611279 143611527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143621037 143621162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143624108 143624338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143627614 143627760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143693113 143693202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143695491 143700675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6420 nt):
ATGGCGGGGGCTTCTCGGCACCCGACTGGGACGCCCCGGCAGCTCCTTGTGGCGCTCGCCTGCCTGCTCT
TGAGTCGCCCCGCGCTGCAGGGACGGGCATCCTCACTTGGGACCGAGCCCGACCCGGCGCTTTACCTGCC
CGCCCGGGGTGCGCTTGACGGCACTCGCCCCGACGGCCCCAGCGTGCTGATTGCCAACCCTGGACTCCGG
GTGCCCCTGGGTCGTTCCCTTTGGCTCGACCCGCTCCGGGATCTGGTGATTGGAGTGCAGCCGGGGGACC
GGTGCGAAGTCACGGTACTGGACGCCCTGCCGCGGCTCAAGGGCGCGCTCTCCCCGCGCCGCTTCCCCTG
CACCTTCGGGCCCCGCCAAGTCCAGTACACTCACTTCGGCTCCCACAGCCCCGGACGCGCCCGGGTGCTG
CTGCAGCTGCGCTACGACGCCCCGACTCACACTCTGGTGCTGCCCTTCACGCTGGCGGTGGACTTGGTCT
TCTCCCAGCTGGAGCTGGTGACGCGTAACAGGCCTTTGGTAGTGGAGAAGCTGCGAAGCTGGAGCCGCGC
CATAGACAGGAGAGTGCTGGACTTCGCCTCCCTGAAGTCTGGAGCCACGGCCACCCGCAGGTGCCGGCTT
ACCCCACTTCCTCACGAGGACGGCCCCCTGCCCAAGTACGGGCGCTTGGTGGACGCGGTGGGGGCCCCTC
TCCCCAGGGGCAAGGGCGTAGACTGTGAGGCTTTCCTCCGTGCTGGGGTGCGCTATCAGCACACAGCCAC
CTCCTCGCCCAACCGTGACTACGTGCCCATGATGGTGGAGCTGCTGGGGCCTGAGGGCCAAGACGCTGGG
TCCGCGGGTGTGCTGGTCCGCGAGCACTTCCAGCTGCTCGTGAGGATCCGCGGCGGAGCCGAGAACACAC
CGCCCAGGCCCAGCTTCATGGCCACGATGATGATGGAGGTGGATCCACTGGTGCTGACAGCCCTGACGCC
TGACGCACTGGCCGCGGAGGACGTCGAGTCAGACCCTGGTGACCTGGTGTTCAACATTCTGAACGCCCCC
ACTCACCCACCAGGGCACCCGGGGCAACAGGGCTACGTGGTCAGCACCGACGACCCTCTAGGGCTTCCAG
TCTCCTTCTTCACCCAGCAGGAGCTGAGGGAGCTGAAGATTGCCTATCAGCCCCCTGCAGAGAACTCCCA
TGGGGAGCGCCTCTTTCAGCTGGAGCTGGAGGTGGTGGACGGAGACGGCGCCGCCTCAGACCCCTTTGCC
TTCATGGTGACAGTGAAATCCATGAATACTCTGGTCCCAGTGGCTAGCCATAACAGGGGACTTGTGCTTT
TTGAAGGTCAGTCAAGGCCCTTGTCCAGCACCCACAGCATTCCTATCAGTGATAAAGATAACCTGGAAGA
GGTGAAAATGGCTGCAGTCAGGGGCTTGAGACATGGGCAGCTGGTGGTGTTTGGGGCACCTGCTGGGTGC
AAGTATTTCACACCAGCGGACCTGGCAGCAGGGCGAGTGGTGTATCAGCATGATGGCAGCAACACCTACA
GTGACAATATCATCTTCCGGATGGAGGACGGGCACCACCAAGTGGACTTCCTCTTTCCCCTCACCATCCT
ACCTGTGGATGATGAACCACCAATGGTCAATACTAACACAGGACTCTCACTCACTGAAGGGCAGGTGGTC
CAGATCTCTCCCTTTGTACTGAGTGCTACTGATATTGACTCTGAGGACTCAACCATCCACTTTGTGCTGG
AGAACCAGCCCCTAAAAGGAAATGAGGAAGAGCCTCAGTGGGAGTTGGCCCCTGGTTCCTCCCACTCAGG
CCACTACCTGGGGGACCTGTTGCTGCAGCAGGCTGAACTACCTCTCTCAACTGAAGATGAAGACTGGCAC
TACATGGAAAAGGAAGGGCTTTATGAGAAAGTGGTGACTGAGTGGCTACAGAGAGACATAATGGAAGGGA
GACTCTTCTACCGCCATCTTGGACCACACAGCCCTCAATCTGTAATGGTCCAGCTGGCTTTCCATGTGCA
GGATGACCATGACCCACCCAATCTCTCCAAACAGCACATTTTCACCATCAAGGTCCAACCAGTGGATATA
CTGAGTCCACAGCTGTATCCAGGAACTACACTAGAAATGACTGTACAAGAATACCAACTCACTCACTTCC
AGAAGAATTTCCTCCGATACATTGACCAGGACTCTGATGACCAGAACCTATGGTACACCCTACTGACACT
CCCGACTGACACAGATGGCAACCACCAAGTCCGGGCTGGAGAAATTGTGCTCACTGATTCACCAGACACA
CTCATCATGCACTTTACCCAAGCCCAGGTAAATCAGCATAAAGTTGCCTACCAGCCTCCACAGAAATTGG
GTATTGCACCACGGGTTGTGCAGTTTACTTACCAGGTGGAAGATGCTGCAGGCAATAGCGTGCCAGGCAC
ATTCACATTATTCCTGCAACCTGTGGACAACCAGCCCCCAGAAGTCACCAACAGAGGCTTTGCTATCTTA
GAGGGAGGCAGCTTTAACCTCAGCAGTAATGAGCTGCATGTTACAGACCCAGACACAGACATTGACCAAA
TTGTCTTCATATTAGTCCGGGGTCCCCAACATGGACACTTGCAGTACTTTAAAAGATGTATGGTCCCAGG
GGAATCTTTCATGCAAGCTGATGTTATTAACGGGAGTGTCTCTTACCAGCATGGCAGAGACCAGACGACT
ACCAGTGACACTTTCCATCTGGAAGTAAGTGATGGGGTGCACCATATACCCATCACCATCCCAATTTCTG
TGCATCCCAATGTGGCTAACAGAAGTCCTAGGATCTCTCTCAGAAGTAGTTCATTATTGGATGTTTCTAT
AGACGTACTAGAGAATAAAGCCACTGAAATTACCATGGGTGTCATCCATGGCAAAAGGAAGGATGTAGGT
GACTTGATGCTGTCTTTCATTGTAAAGGACAGCCCCAAACTGGGCACTATTCTGGTAAATGGTTTGCCCA
CAGAACGATTCACCCAAGAGGATCTCATCAATGGGAGAGTAGCCTATGCCCACACTGCAGGTGAAGTTGG
TTTTCAAAAGCAGCACGATGCCTTCAGCCTCATCCTCTCCAAAGATTCTTACCAATGGGTAGTGGGGAAT
AGCATAATAGAGAAAGTACAGGTACAAGTAACTGTGCTGCCTGTGGACAATGTGGGACCCAAGGTCTTCG
TCGGGGAGTCCTTCATTGTCTATGAAGGTGAGAAGAACTCCTTGACCTTACAACATCTCCATGTTGAAGA
TGTGGACACTCATCAAGATGAACTCCTCTGCACAGTGACTAGTCAGCCAGCCTCTGGCTACCTGGAAAAG
ATTGCATCAGCTCCTGGTTCAAAAATGTCCCAGTCTGGTAGCCCTATCAGTGCTTTCTCCCTCAGAGATA
TCCAAGTGAGGCATATCAATTATGTACAGAGTATTCACAAGGGAGTAGAGCCACAAGAGGACCAATTCAC
CTTTTATTGCTCTGATGGCATCAACTTCTCCCCAAATGTCTTCTTCCCTATAATCATCCTACCCACCAAT
GATGAGCAGCCTAAACTTTTTGCCCATGAGTTTAAGGTACTAGAGGGGATGAGCCTGGTCATAGACACCC
AGCTGCTTAATGGAGCAGATGCTGACCTGCCACCAAATGAGCTCCACTTTCAACTCACAGCCCTCCCTCG
GCATGGACGAATCATACAGCAGCTGGCTACAGGCAGCCAGCCCATCCACAGCTTCACCCTCAAGGAGATC
CAGGAGGCCTCCACCATTGTGTATGAGCATGATGACTCAGAGACAAAAGAGGACAGTTTTGAGGTCTGGC
TGAGTGACGGCAAGCACACAACCCACAGGAAGGTACCCATTGTAGTGACCCTAGTGGATGATGAAACTCC
TCACCTGACTGTCAACAATGGGCTGAAGGTAGAGAAAGGACACTCTGAGATCATCACAAATCGGATCCTC
AAGGCCACAGATCTTGACTCAGATGATAAAAGCCTCAGTTTTGTCCTCCATTCTGGGCCTCAACAAGGGC
TTCTACAGAGGCTGAGAAAACCCAGAGGAGAAGTGAGGAACAATCTTACTCTGGGAATGAACTTTACCCA
GGATGAGATTAACAGAGGCCTCATCTGCTATATCCACACAGGCCAAGAAGGGATTGTTGACATTATCAAG
TTTGATGTTACTGATGGGGTTAACACTTTGACAGACCACTACTTCTATGTCACCATTGGCAACTTAGACA
GCGTCTTCCCTGAGGTAATCAGCAAAAGGATCACCTTGATAGAAGGTGCCAGAGTGACCCTTACCAACAA
TCTGCTTACCAACAGTGACATCAACAGCTCTGATGAACATCACTTTAGCATTACACGGGCTCCAAGCCTG
GGTCACTTAGAAAGTTCTGACTATGCTGGGGAACCCATTGCCTCTTTCACTCAACTTCAATTGGCTAGCA
ACAAAATATCCTATGTCCATACTTCAAATGATGAGAAAAAGATGGACAGCTTCGAATTTCAAGTGATCGG
CGAACTCTACCCTGTGTTCAGAACCTTCAGGATCTTCATCACTGATGTGGATAATAAGAAACCTATCTTG
ACCATCCATAGACTAACACTACAGAAAGAGGATAGCCAACTGATCACTCTCCTTGAGTTGACAGTGGAAG
ACAGTGATACCCCAGATGACCTTATTCTCTTTACCATCACCCAGGTCCCCATGCATGGCAAGATTTTGTA
CAATGGTAGCCGTCCCGTGACCACTTTCACCAAGCAAGACCTGAACAAGAACCTGATTAGCTACAAGCAT
GACGGCAGTGAGACCACTGAAGATAGTTTCTCCTTGACTGTGACAGACGGCACTCACACTGATTTCTATG
TCCTACCAGACACTGCCCTGGCGACACACAAACCTCAAGTAATGAGGGTCCAGATAAGATCATTAGACAA
TAGGCTTCCCCAGATTACTACCAACAGGGGTGCCCCAGCCTTGAAGCGCCTTCACACTGGACACATGGGC
TTCCTGATTACCAGCAAGTCTCTGAAGGCAGAAGATCAGGACAGTCCCCACAGGCTTCTGAAGTATAAAG
TGACCAGAGGACCAGAGCATGGCTTCATTATCAAAACTGGCCTTGGAAACCAGAGCACTCGAGTGTTTAC
ACAAGCTGACATTGATGAGATGAAGATATCCTATGTCTTGAATGAGGGCAGCAACGCATCAAAGGACATC
TTCTATTTCTCTGTTGAAGACAATGGAGGAAATAAACTAACAAATCAGCCTTTCCATCTAAACTGGGCTT
GGATTTGTTTGGAGAAAGAGTACTACATTGTGGATGAAGATTCCACATTCTTAGAAGTGACCCTTACACG
CAGAGGATACCTTGGAGAAACATCATTTATCAGCATTGGTACCAAAGATGAAACTGCAAAAAAAGACAAA
GATTTCAAATGGAAGACCAATAAACAGATCCAGTTCAATCCTGGACAGACTACAGCCACATGGAGGGTGA
GAATTATACCTGACAATGAATATGAGACTTCAGAGACCTTCCAGATCATTCTGTCTGAACCTCTCATGGC
TGTACTGGAGTTTCCAGAAATGGCAACGGTTGAAATTGTAGACCCTGGAGATGAATCAACAGTTTATATT
CCAGAGGCGGAATACAAAATAGAAGAGGACATTGGGGAACTTTTGATTCCAGTAAGACGATCTGGAGATG
CAAGCCAGGAACTAATCGTCATTTGCTCCACACGTCAAGGTTCTGCCACAGGCACGATTTCTTCCACAGT
GTTATTCTCTGATTACATCTCACGTCCAGAAGACCACACCAGCATCCTCCACTTTGACAAGAATGAGACA
CAGAAGACCTGCCAGGTCCTGATCATTGATGACTCCCTTTATGAAGAGGAGGAATCCTTCAGCGTTTCAC
TTAGGCTGCCAGTGGGAGGACAGCTGGGAGCCAGATTCCCCACCACTAAGGTGACTATTCTGGCTGATCG
TTATGATGAACCTGTCCTGCACTTTGGGGATGCTGAATATCACGTCAATGAAAGTGCTCGCTACGTGGAG
GTTTGTGTTTGGAGAAGAGGCACTGATCTTTCCCAACCATCATCCATCGCCGTGCGCTCCAGAAAGTCAG
AGCAGGAGTCAGCAGAAGCTGGAACAGATTATGTTGGTATCAGCCGAAACCTGGACTTTGCTCCAGGCGT
GCGCATGCAGACATTCCAAGTGACCATCCTTGATGACCTGGGACAGCCTACCTTGGAAGGCCCAGAGAAG
TTTGAATTACTTCTTCAGATGCCTATGGGTGCAGTGCTTGGAGAACCAAATAAAACTACCATTTTCATCG
AGGACACCATCACGGACTGTAAGCAGAGTGCTTGTAGTTCCTTTGATTGA

Translation (2139 aa):
MAGASRHPTGTPRQLLVALACLLLSRPALQGRASSLGTEPDPALYLPARGALDGTRPDGPSVLIANPGLR
VPLGRSLWLDPLRDLVIGVQPGDRCEVTVLDALPRLKGALSPRRFPCTFGPRQVQYTHFGSHSPGRARVL
LQLRYDAPTHTLVLPFTLAVDLVFSQLELVTRNRPLVVEKLRSWSRAIDRRVLDFASLKSGATATRRCRL
TPLPHEDGPLPKYGRLVDAVGAPLPRGKGVDCEAFLRAGVRYQHTATSSPNRDYVPMMVELLGPEGQDAG
SAGVLVREHFQLLVRIRGGAENTPPRPSFMATMMMEVDPLVLTALTPDALAAEDVESDPGDLVFNILNAP
THPPGHPGQQGYVVSTDDPLGLPVSFFTQQELRELKIAYQPPAENSHGERLFQLELEVVDGDGAASDPFA
FMVTVKSMNTLVPVASHNRGLVLFEGQSRPLSSTHSIPISDKDNLEEVKMAAVRGLRHGQLVVFGAPAGC
KYFTPADLAAGRVVYQHDGSNTYSDNIIFRMEDGHHQVDFLFPLTILPVDDEPPMVNTNTGLSLTEGQVV
QISPFVLSATDIDSEDSTIHFVLENQPLKGNEEEPQWELAPGSSHSGHYLGDLLLQQAELPLSTEDEDWH
YMEKEGLYEKVVTEWLQRDIMEGRLFYRHLGPHSPQSVMVQLAFHVQDDHDPPNLSKQHIFTIKVQPVDI
LSPQLYPGTTLEMTVQEYQLTHFQKNFLRYIDQDSDDQNLWYTLLTLPTDTDGNHQVRAGEIVLTDSPDT
LIMHFTQAQVNQHKVAYQPPQKLGIAPRVVQFTYQVEDAAGNSVPGTFTLFLQPVDNQPPEVTNRGFAIL
EGGSFNLSSNELHVTDPDTDIDQIVFILVRGPQHGHLQYFKRCMVPGESFMQADVINGSVSYQHGRDQTT
TSDTFHLEVSDGVHHIPITIPISVHPNVANRSPRISLRSSSLLDVSIDVLENKATEITMGVIHGKRKDVG
DLMLSFIVKDSPKLGTILVNGLPTERFTQEDLINGRVAYAHTAGEVGFQKQHDAFSLILSKDSYQWVVGN
SIIEKVQVQVTVLPVDNVGPKVFVGESFIVYEGEKNSLTLQHLHVEDVDTHQDELLCTVTSQPASGYLEK
IASAPGSKMSQSGSPISAFSLRDIQVRHINYVQSIHKGVEPQEDQFTFYCSDGINFSPNVFFPIIILPTN
DEQPKLFAHEFKVLEGMSLVIDTQLLNGADADLPPNELHFQLTALPRHGRIIQQLATGSQPIHSFTLKEI
QEASTIVYEHDDSETKEDSFEVWLSDGKHTTHRKVPIVVTLVDDETPHLTVNNGLKVEKGHSEIITNRIL
KATDLDSDDKSLSFVLHSGPQQGLLQRLRKPRGEVRNNLTLGMNFTQDEINRGLICYIHTGQEGIVDIIK
FDVTDGVNTLTDHYFYVTIGNLDSVFPEVISKRITLIEGARVTLTNNLLTNSDINSSDEHHFSITRAPSL
GHLESSDYAGEPIASFTQLQLASNKISYVHTSNDEKKMDSFEFQVIGELYPVFRTFRIFITDVDNKKPIL
TIHRLTLQKEDSQLITLLELTVEDSDTPDDLILFTITQVPMHGKILYNGSRPVTTFTKQDLNKNLISYKH
DGSETTEDSFSLTVTDGTHTDFYVLPDTALATHKPQVMRVQIRSLDNRLPQITTNRGAPALKRLHTGHMG
FLITSKSLKAEDQDSPHRLLKYKVTRGPEHGFIIKTGLGNQSTRVFTQADIDEMKISYVLNEGSNASKDI
FYFSVEDNGGNKLTNQPFHLNWAWICLEKEYYIVDEDSTFLEVTLTRRGYLGETSFISIGTKDETAKKDK
DFKWKTNKQIQFNPGQTTATWRVRIIPDNEYETSETFQIILSEPLMAVLEFPEMATVEIVDPGDESTVYI
PEAEYKIEEDIGELLIPVRRSGDASQELIVICSTRQGSATGTISSTVLFSDYISRPEDHTSILHFDKNET
QKTCQVLIIDDSLYEEEESFSVSLRLPVGGQLGARFPTTKVTILADRYDEPVLHFGDAEYHVNESARYVE
VCVWRRGTDLSQPSSIAVRSRKSEQESAEAGTDYVGISRNLDFAPGVRMQTFQVTILDDLGQPTLEGPEK
FELLLQMPMGAVLGEPNKTTIFIEDTITDCKQSACSSFD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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