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Report for CCDS5482.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5482.1 Public Homo sapiens 7 YKT6 24 110 108 CCDS HistoryNCBI Gene:10652Re-query CCDS DB by CCDS ID:5482.1Re-query CCDS DB by GeneID:10652See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5482.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000223369.3 ENSP00000223369.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000223369.3Link to Ensembl Protein Viewer:ENSP00000223369.2Re-query CCDS DB by Nucleotide ID:ENST00000223369Re-query CCDS DB by Protein ID:ENSP00000223369
Original member Current member EBI ENST00000679020.1 ENSP00000504623.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679020.1Link to Ensembl Protein Viewer:ENSP00000504623.1Re-query CCDS DB by Nucleotide ID:ENST00000679020Re-query CCDS DB by Protein ID:ENSP00000504623
Original member Current member NCBI NM_006555.4 NP_006546.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006555.4Link to Protein Sequence:NP_006546.1Re-query CCDS DB by Nucleotide ID:NM_006555Re-query CCDS DB by Protein ID:NP_006546Link to BLAST:NP_006546.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006546.1 198 O15498-1 198 100% 0 0

Chromosomal Locations for CCDS 5482.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44201136 44201239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44204568 44204650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44206385 44206485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44207388 44207492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44208133 44208198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44211023 44211124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44212247 44212282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGAAGCTGTACAGCCTCAGCGTCCTCTACAAAGGCGAGGCCAAGGTGGTGCTGCTCAAAGCCGCATACG
ATGTGTCTTCCTTCAGCTTTTTCCAGAGATCCAGCGTTCAGGAATTCATGACCTTCACGAGTCAACTGAT
TGTGGAGCGCTCATCGAAAGGCACTAGAGCTTCTGTCAAAGAACAAGACTATCTGTGCCACGTCTACGTC
CGGAATGATAGTCTTGCAGGTGTGGTCATTGCTGACAATGAATACCCATCCCGGGTGGCCTTTACCTTGC
TGGAGAAGGTACTAGATGAATTCTCCAAGCAAGTCGACAGGATAGACTGGCCAGTAGGATCCCCTGCTAC
AATCCATTACCCAGCCCTGGATGGTCACCTCAGTAGATACCAGAACCCACGAGAAGCTGATCCCATGACT
AAAGTGCAGGCCGAACTAGATGAGACCAAAATCATTCTGCACAACACCATGGAGTCTCTGTTAGAGCGAG
GTGAGAAGCTAGATGACTTGGTGTCCAAATCCGAGGTGCTGGGAACACAGTCTAAAGCCTTCTATAAAAC
TGCCCGGAAACAAAACTCATGCTGTGCCATCATGTGA

Translation (198 aa):
MKLYSLSVLYKGEAKVVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSSKGTRASVKEQDYLCHVYV
RNDSLAGVVIADNEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHYPALDGHLSRYQNPREADPMT
KVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNSCCAIM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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