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Report for CCDS54832.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54832.1 Public Homo sapiens 5 NSUN2 24 110 108 CCDS HistoryNCBI Gene:54888Re-query CCDS DB by CCDS ID:54832.1Re-query CCDS DB by GeneID:54888See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54832.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000506139.5 ENSP00000420957.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506139.5Link to Ensembl Protein Viewer:ENSP00000420957.1Re-query CCDS DB by Nucleotide ID:ENST00000506139Re-query CCDS DB by Protein ID:ENSP00000420957
Original member Current member NCBI NM_001193455.2 NP_001180384.1 Accepted alive Link to Nucleotide Sequence:NM_001193455.2Link to Protein Sequence:NP_001180384.1Re-query CCDS DB by Nucleotide ID:NM_001193455Re-query CCDS DB by Protein ID:NP_001180384Link to BLAST:NP_001180384.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180384.1 732 Q08J23-2 732 100% 0 0

Chromosomal Locations for CCDS 54832.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 6599926 6600232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6602461 6602500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6604138 6604276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6604605 6604685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6605273 6605408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6606820 6606912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6607200 6607384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6609826 6609922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6610955 6611085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6611725 6611798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6616727 6616857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6617950 6618024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6620106 6620298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6622016 6622100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6623214 6623285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6625564 6625669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6632599 6632756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 6632884 6632979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2199 nt):
ATGGGGCGGCGGTCGCGGGGTCGGCGGCTCCAGCAACAGCAGCGGCCGGAGGACGCGGAGGATGGCGCCG
AGGGTGGTGGAAAGCGCGGCGAGGCGGGCTGGGAAGGAGGCTACCCCGAGATCGTCAAGGAGAACAAGCT
GTTCGAGCACTACTACCAGGAGCTCAAGATCGTGCCCGAGGGCGAGTGGGGCCAGTTCATGGACGCTCTC
AGGGAGCCGCTCCCGGCCACTTTAAGAATTACTGGTTACAAAAGGTATCCTGAAGAACTTGCCTGGCACA
CAAATTTAAGTCGAAAAATCTTGAGAAAATCGCCACACTTGGAAAAGTTTCATCAGTTTCTAGTTAGTGA
AACAGAATCTGGAAATATTAGTCGTCAAGAAGCTGTTAGCATGATCCCACCACTGCTCCTCAACGTGCGG
CCTCATCATAAGATCTTAGATATGTGTGCAGCACCTGGCTCAAAGACCACACAGTTAATTGAAATGCTAC
ATGCCGACATGAATGTCCCCTTTCCAGAGGGATTTGTTATTGCGAATGATGTGGACAACAAGCGCTGCTA
CCTGCTCGTCCATCAAGCCAAGAGGCTGAGCAGCCCCTGCATCATGGTGGTCAACCATGATGCCTCCAGC
ATACCCAGGCTCCAGATAGATGTGGACGGCAGGAAAGAGATCCTCTTCTATGATCGAATTTTATGTGATG
TCCCTTGCAGTGGAGACGGCACTATGAGAAAAAACATTGATGTTTGGAAAAAGTGGACCACCTTAAATAG
CTTGCAGCTACATGGCTTACAGCTGCGGATTGCAACACGCGGGGCTGAACAGCTGGCTGAAGGTGGAAGG
ATGGTGTATTCCACGTGTTCACTAAACCCTATTGAGGATGAAGCAGTCATAGCATCTTTACTGGAAAAAA
GTGAAGGTGCTTTGGAGCTTGCTGATGTGTCTAATGAACTGCCAGGGCTGAAGTGGATGCCTGGAATCAC
ACAGTGGAAGGTAATGACGAAAGATGGGCAGTGGTTTACAGACTGGGACGCTGTTCCTCACAGCAGACAC
ACCCAGATCCGACCTACCATGTTCCCTCCGAAGGACCCAGAAAAGCTGCAGGCCATGCACCTGGAGCGAT
GCCTTAGGATATTACCCCATCATCAGAATACTGGAGGGTTTTTTGTGGCAGTATTGGTGAAAAAATCTTC
AATGCCGTGGAATAAACGTCAGCCAAAGCTTCAGGGTAAATCTGCAGAGACCAGAGAAAGCACACAGCTG
AGCCCTGCAGATCTCACAGAAGGGAAACCCACAGATCCCTCTAAGCTGGAAAGTCCGTCATTCACAGGAA
CTGGTGACACAGAAATAGCTCATGCAACTGAGGATTTAGAGAATAATGGCAGTAAGAAAGATGGCGTGTG
TGGTCCTCCTCCATCAAAGAAAATGAAGTTATTTGGATTTAAAGAAGATCCATTTGTATTTATTCCTGAA
GATGACCCATTATTTCCACCTATTGAGAAATTTTATGCTTTGGATCCTTCATTCCCAAGGATGAATTTGT
TAACTCGGACTACAGAAGGGAAGAAAAGGCAGCTCTACATGGTTTCTAAGGAGTTGCGGAATGTGCTGCT
GAATAACAGTGAGAAGATGAAGGTTATTAACACGGGGATCAAAGTCTGGTGTAGAAATAACAGCGGTGAA
GAGTTTGACTGTGCTTTCCGGCTGGCACAGGAGGGAATATATACATTGTATCCATTTATTAACTCAAGAA
TTATTACTGTATCAATGGAAGATGTTAAGATACTGTTGACCCAGGAAAATCCCTTTTTTAGAAAACTCAG
CAGTGAGACCTACAGTCAAGCAAAGGACCTGGCAAAGGGAAGCATCGTGCTGAAGTATGAACCAGATTCT
GCGAATCCAGACGCTCTGCAGTGTCCCATCGTCTTATGCGGATGGCGGGGAAAGGCCTCCATTCGAACTT
TTGTGCCCAAGAATGAACGGCTTCATTATCTCAGGATGATGGGGCTGGAGGTATTGGGAGAAAAGAAGAA
GGAAGGGGTTATCCTCACAAATGAGAGTGCAGCCAGCACCGGACAGCCAGACAATGACGTGACTGAGGGA
CAGAGAGCAGGAGAGCCCAACAGCCCAGATGCAGAAGAGGCCAACAGTCCAGACGTGACAGCAGGCTGTG
ACCCGGCGGGGGTCCATCCACCCCGGTGA

Translation (732 aa):
MGRRSRGRRLQQQQRPEDAEDGAEGGGKRGEAGWEGGYPEIVKENKLFEHYYQELKIVPEGEWGQFMDAL
REPLPATLRITGYKRYPEELAWHTNLSRKILRKSPHLEKFHQFLVSETESGNISRQEAVSMIPPLLLNVR
PHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVDNKRCYLLVHQAKRLSSPCIMVVNHDASS
IPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGR
MVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRH
TQIRPTMFPPKDPEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPKLQGKSAETRESTQL
SPADLTEGKPTDPSKLESPSFTGTGDTEIAHATEDLENNGSKKDGVCGPPPSKKMKLFGFKEDPFVFIPE
DDPLFPPIEKFYALDPSFPRMNLLTRTTEGKKRQLYMVSKELRNVLLNNSEKMKVINTGIKVWCRNNSGE
EFDCAFRLAQEGIYTLYPFINSRIITVSMEDVKILLTQENPFFRKLSSETYSQAKDLAKGSIVLKYEPDS
ANPDALQCPIVLCGWRGKASIRTFVPKNERLHYLRMMGLEVLGEKKKEGVILTNESAASTGQPDNDVTEG
QRAGEPNSPDAEEANSPDVTAGCDPAGVHPPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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