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Report for CCDS54893.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54893.1 Public Homo sapiens 5 GRAMD2B 24 110 108 CCDS HistoryNCBI Gene:65983Re-query CCDS DB by CCDS ID:54893.1Re-query CCDS DB by GeneID:65983See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54893.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000511134.1 ENSP00000426088.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511134.1Link to Ensembl Protein Viewer:ENSP00000426088.1Re-query CCDS DB by Nucleotide ID:ENST00000511134Re-query CCDS DB by Protein ID:ENSP00000426088
Original member Current member NCBI NM_001146322.3 NP_001139794.1 Accepted alive Link to Nucleotide Sequence:NM_001146322.3Link to Protein Sequence:NP_001139794.1Re-query CCDS DB by Nucleotide ID:NM_001146322Re-query CCDS DB by Protein ID:NP_001139794Link to BLAST:NP_001139794.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139794.1 416 Q96HH9-4 416 100% 0 0

Chromosomal Locations for CCDS 54893.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 126465391 126465545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126469677 126469788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126472238 126472304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126473265 126473368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126477692 126477787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126480456 126480527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126480627 126480707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126483463 126483574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126484402 126484524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126485686 126485773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126486873 126486977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126488799 126488892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126492915 126492956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGTCTAAAGTGAAGCGGTTTCCTTTCTTCTTCAGCTCAGAGGCTGAGAATGGTGTGGAGGAGAAAAAGA
AAGCCTGCAGGTCGCCAACAGCCCAATCCCCTACCCCATCTGTGGAGGCGGACTCCCCAGACCAGAAGAA
AATCATTAGCCTATGGTCAAAATCCAGTTTTGATGGTGCCTCTTTAGCAAGTGATAAGAACGACTGTAAA
ACAGAAAGCAAAAATGACCCTAAGACTGAAAGAAAAAAGTCTTCATCTTCCAGCCAGTACAAGGCCAATA
TGCACTTTCACAAGTTGTTTCTTAGTGTCCCAACGGAGGAACCACTGAAGCAAAGCTTTACCTGTGCTCT
ACAGAAAGAAATACTATACCAAGGAAAGCTCTTTGTATCAGAAAACTGGATTTGTTTTCATTCCAAAGTC
TTTGGAAAAGACACAAAGATCTCTATTCCAGCTTTCTCGGTAACCCTAATAAAGAAAACCAAAACTGCTC
TTCTAGTGCCAAACGCCCTGATCATAGCAACAGTCACAGACAGGTACATATTTGTCTCCTTACTCTCCAG
AGATTCAACTTACAAACTACTAAAATCTGTGTGTGGACACTTAGAAAATACAAGTGTTGGTAACAGTCCC
AATCCATCTTCTGCTGAAAACAGTTTCCGAGCAGACCGCCCTTCATCTCTGCCTCTGGATTTCAATGATG
AATTCTCAGATCTGGATGGAGTGGTTCAACAAAGAAGGCAAGACATGGAAGGATATAGCAGTTCTGGTTC
TCAAACTCCTGAATCTGAGAACTCTCGAGATTTCCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCC
AAGGGAGAAGCAAAGCCAACTCGGGCAGATGCCCATGTGAACAGAGTACCTGAAGGAAAAGCCAAGAGTC
TCCCTGTACAGGGTCTGTCAGAAACTGTTGGAATCTTACATAAAGTCAAGTCTCAGAAATGTCCGATGCT
TCACCATATTCTTATATTCTATGCAATTGTTGTCTGTGCACTAATCATCTCGACCTTCTACATGAGATAC
AGAATTAATACTCTGGAGGAGCAGCTGGGGTTACTAACCTCCATTGTGGACACCCATAATACTGAACAGG
CAGCACCATCTGGCCTGAGGTCACAAGTACAATTCAATGTGGAGGTTCTCTGTCAAGAGCTTACAGCTAA
CATAGTGAAATTAGAAAAGATACAAAATAACTTACAGAAGTTGCTTGAGAATGGTGACTGA

Translation (416 aa):
MSKVKRFPFFFSSEAENGVEEKKKACRSPTAQSPTPSVEADSPDQKKIISLWSKSSFDGASLASDKNDCK
TESKNDPKTERKKSSSSSQYKANMHFHKLFLSVPTEEPLKQSFTCALQKEILYQGKLFVSENWICFHSKV
FGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLENTSVGNSP
NPSSAENSFRADRPSSLPLDFNDEFSDLDGVVQQRRQDMEGYSSSGSQTPESENSRDFHATESQTVLNVS
KGEAKPTRADAHVNRVPEGKAKSLPVQGLSETVGILHKVKSQKCPMLHHILIFYAIVVCALIISTFYMRY
RINTLEEQLGLLTSIVDTHNTEQAAPSGLRSQVQFNVEVLCQELTANIVKLEKIQNNLQKLLENGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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