CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS54937.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
54937.1 |
Public |
Homo sapiens |
5 |
SYNPO |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:11346](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:54937.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:11346](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 5 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 54937.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000394243.5 |
ENSP00000377789.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000394243.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000377789.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000394243](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000377789](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000522122.1 |
ENSP00000428378.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000522122.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000428378.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000522122](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000428378](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001166208.2 |
NP_001159680.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001166208.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001159680.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001166208](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001159680](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001159680.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001166209.2 |
NP_001159681.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001166209.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001159681.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001166209](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001159681](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001159681.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 54937.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2790 nt): ATGCTGGGTCCTCACCTCCCACCTCCGCCCCTTGCACCCAGCGAAGGGAGGCCTACCCCCTGCGCCTTCC AGATCCCTGATGGAAGCTACAGGTGTCTGGCTCTGGAAGCCGAGGAGAGCAGCGGTGAGGAGGGCCTGCA GGGAGAGGTGGGGCCTACCGACCTGGAAGAGGATGAGGGGGTCAGCAGGAGTGGGGACGACTCTGCCTGC AGAGTCACCCAGGGGACACCGCAGCTGCCCAAAGCCCTGGGCATCCAACCACCCAGCTGCTCCAGAGAGG AACAAGGGGCGTCCCAGCACGACGACAGGGCCAGCCAGGACTGGGATGTAGTGAAGGCCGGGCAGATGAT GACAGCCAGCCCCAGCCCTGGCCCTGGGCCCAGAGTGGCCCAGAAACCAGCGTTGGGCCGGAGCACTAGC CTCACGGAGAAGGATCTGAAAGAAGCCAAGGCGCGGAGCCAGCAGATTGCAGCCCAGCTGACCACCCCTC CCAGCTCCAATTCCCGTGGCGTCCAGCTCTTCAACAGGCGCCGGCAGAGGGTGAACGAGTTCACCTTGGA GAGCCACGGCCAGAGGGGACAGAAGCCCAGCCAGGAGTCCCTCAGAGTGCTCCCTTCAAGCCTCCCAGGC CATGCACCGGGGCTCAGCCTGAGTTCCACCTCGCTGCCGGAGCCAGGCCCTCCACGGCACCCCAGTCCCC AGAGCCCCGACAGAGGGGTCCCTGGCCACAGCATGGAGGGGTACTCAGAGGAGGCTAGCTTGCTGCGGCA CCTGGAGAAGGTGGCCAGTGAGGAGGAAGAGGTACCACTGGTGGTTTATCTAAAGGAGAATGCAGCACTG CTGACAGCCAATGGGCTGCACCTGTCCCAAAACCGAGAGGCCCAGCAGTCCTCACCGGCCCCACCTCCAG CTGAGGTCCACAGCCCAGCTGCAGATGTCAACCAAAACCTTGCCTCGCCCAGTGCCACGCTCACCACACC AACTTCTAACAGCAGCCACAATCCGCCAGCCACCGATGTCAATCAGAACCCACCGGCAACTGTTGTCCCA CAGAGCCTGCCACTTTCTAGCATCCAACAGAATTCCTCAGAGGCCCAACTCCCATCTAATGGCACAGGGC CTGCTTCCAAACCCAGCACCCTGTGTGCTGATGGGCAACCCCAGGCACCGGCTGAGGAGGTGAGATGCAG CACACTCCTAATTGACAAGGTATCAACTCCAGCTACCACCACCAGCACCTTCTCCAGAGAAGCTACGCTC ATCCCCAGCTCCAGGCCCCCAGCCTCAGATTTCATGTCCAGCTCCCTGCTCATTGACATCCAGCCCAACA CCCTAGTGGTGTCAGCAGATCAAGAGATGTCTGGGCGAGCAGCTGCCACCACGCCCACCAAGGTCTACAG TGAGGTCCACTTCACACTGGCCAAGCCCCCATCAGTGGTCAACAGGACGGCCAGGCCTTTTGGGATCCAG GCGCCAGGGGGCACCAGCCAGATGGAGAGGAGCCCCATGCTAGAGAGACGACATTTTGGGGAGAAGGCCC CGGCTCCCCAGCCCCCCAGTTTGCCAGACAGGAGCCCCCGGCCACAGAGACACATAATGTCCCGCAGCCC CATGGTGGAAAGGAGGATGATGGGGCAGCGAAGCCCGGCCTCAGAGAGACGCCCCTTGGGGAACTTCACT GCACCCCCCACCTACACTGAGACCTTGTCCACAGCCCCTCTGGCTTCCTGGGTGAGGTCTCCTCCCTCAT ATTCTGTCCTGTATCCCAGCTCCGACCCCAAGTCTTCTCATCTGAAGGGCCAGGCGGTTCCTGCCAGCAA GACGGGCATTCTGGAGGAGTCGATGGCCCGCCGGGGCAGCCGCAAATCCATGTTTACTTTCGTGGAGAAG CCCAAGGTGACCCCGAATCCAGACTTGCTGGATCTGGTACAGACAGCGGATGAGAAGCGGCGGCAGAGGG ACCAGGGGGAGGTAGGCGTGGAGGAGGAGCCCTTCGCACTGGGGGCCGAGGCCTCCAACTTCCAGCAGGA GCCAGCACCTCGTGACAGGGCCAGCCCCGCGGCGGCGGAGGAGGTGGTACCAGAGTGGGCCTCCTGCCTC AAGTCACCCCGCATCCAGGCCAAGCCGAAGCCCAAACCCAACCAGAACCTCTCCGAGGCCTCTGGGAAGG GAGCTGAGCTCTACGCCCGCCGCCAGTCACGGATGGAGAAATATGTCATCGAGTCTTCAAGCCACACGCC AGAGCTGGCCCGCTGCCCATCACCTACCATGTCCCTGCCTTCCTCCTGGAAATACCCCACTAACGCCCCC GGGGCCTTCCGAGTGGCATCCCGAAGCCCAGCCCGGACCCCGCCTGCCTCCCTCTACCATGGCTACCTGC CTGAGAACGGGGTCCTGCGCCCAGAGCCCACCAAGCAGCCGCCATACCAGCTGCGCCCCTCGCTCTTTGT CCTCTCACCTATCAAGGAGCCTGCCAAGGTCTCACCAAGAGCTGCCTCGCCCGCCAAGCCCAGCTCCTTG GACCTGGTGCCCAACCTGCCCAAGGGGGCTCTCCCTCCATCTCCTGCCCTGCCTCGGCCCTCGCGCTCCT CACCGGGCCTCTACACCTCCCCCGGCCAGGACAGCCTGCAGCCCACTGCCGTGAGCCCTCCTTACGGCGG TGACATCTCCCCCGTGTCTCCCTCCAGGGCGTGGTCTCCCCGAGCCAAGCAGGCCCCCAGGCCCTCCTTC TCTACCCGGAACGCCGGGATCGAGGCTCAGGTGTGGAAGCCTTCCTTCTGCTTCAAGTAA
Translation (929 aa): MLGPHLPPPPLAPSEGRPTPCAFQIPDGSYRCLALEAEESSGEEGLQGEVGPTDLEEDEGVSRSGDDSAC RVTQGTPQLPKALGIQPPSCSREEQGASQHDDRASQDWDVVKAGQMMTASPSPGPGPRVAQKPALGRSTS LTEKDLKEAKARSQQIAAQLTTPPSSNSRGVQLFNRRRQRVNEFTLESHGQRGQKPSQESLRVLPSSLPG HAPGLSLSSTSLPEPGPPRHPSPQSPDRGVPGHSMEGYSEEASLLRHLEKVASEEEEVPLVVYLKENAAL LTANGLHLSQNREAQQSSPAPPPAEVHSPAADVNQNLASPSATLTTPTSNSSHNPPATDVNQNPPATVVP QSLPLSSIQQNSSEAQLPSNGTGPASKPSTLCADGQPQAPAEEVRCSTLLIDKVSTPATTTSTFSREATL IPSSRPPASDFMSSSLLIDIQPNTLVVSADQEMSGRAAATTPTKVYSEVHFTLAKPPSVVNRTARPFGIQ APGGTSQMERSPMLERRHFGEKAPAPQPPSLPDRSPRPQRHIMSRSPMVERRMMGQRSPASERRPLGNFT APPTYTETLSTAPLASWVRSPPSYSVLYPSSDPKSSHLKGQAVPASKTGILEESMARRGSRKSMFTFVEK PKVTPNPDLLDLVQTADEKRRQRDQGEVGVEEEPFALGAEASNFQQEPAPRDRASPAAAEEVVPEWASCL KSPRIQAKPKPKPNQNLSEASGKGAELYARRQSRMEKYVIESSSHTPELARCPSPTMSLPSSWKYPTNAP GAFRVASRSPARTPPASLYHGYLPENGVLRPEPTKQPPYQLRPSLFVLSPIKEPAKVSPRAASPAKPSSL DLVPNLPKGALPPSPALPRPSRSSPGLYTSPGQDSLQPTAVSPPYGGDISPVSPSRAWSPRAKQAPRPSF STRNAGIEAQVWKPSFCFK
|