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Report for CCDS54938.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54938.1 Public Homo sapiens 5 SYNPO 24 110 108 CCDS HistoryNCBI Gene:11346Re-query CCDS DB by CCDS ID:54938.1Re-query CCDS DB by GeneID:11346See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54938.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000519664.1 ENSP00000429268.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000519664.1Link to Ensembl Protein Viewer:ENSP00000429268.1Re-query CCDS DB by Nucleotide ID:ENST00000519664Re-query CCDS DB by Protein ID:ENSP00000429268
Original member Current member NCBI NM_001109974.3 NP_001103444.1 Accepted alive Link to Nucleotide Sequence:NM_001109974.3Link to Protein Sequence:NP_001103444.1Re-query CCDS DB by Nucleotide ID:NM_001109974Re-query CCDS DB by Protein ID:NP_001103444Link to BLAST:NP_001103444.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103444.1 685 Q8N3V7-3 685 100% 0 0

Chromosomal Locations for CCDS 54938.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 150648276 150650333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2058 nt):
ATGGAGGGGTACTCAGAGGAGGCTAGCTTGCTGCGGCACCTGGAGAAGGTGGCCAGTGAGGAGGAAGAGG
TACCACTGGTGGTTTATCTAAAGGAGAATGCAGCACTGCTGACAGCCAATGGGCTGCACCTGTCCCAAAA
CCGAGAGGCCCAGCAGTCCTCACCGGCCCCACCTCCAGCTGAGGTCCACAGCCCAGCTGCAGATGTCAAC
CAAAACCTTGCCTCGCCCAGTGCCACGCTCACCACACCAACTTCTAACAGCAGCCACAATCCGCCAGCCA
CCGATGTCAATCAGAACCCACCGGCAACTGTTGTCCCACAGAGCCTGCCACTTTCTAGCATCCAACAGAA
TTCCTCAGAGGCCCAACTCCCATCTAATGGCACAGGGCCTGCTTCCAAACCCAGCACCCTGTGTGCTGAT
GGGCAACCCCAGGCACCGGCTGAGGAGGTGAGATGCAGCACACTCCTAATTGACAAGGTATCAACTCCAG
CTACCACCACCAGCACCTTCTCCAGAGAAGCTACGCTCATCCCCAGCTCCAGGCCCCCAGCCTCAGATTT
CATGTCCAGCTCCCTGCTCATTGACATCCAGCCCAACACCCTAGTGGTGTCAGCAGATCAAGAGATGTCT
GGGCGAGCAGCTGCCACCACGCCCACCAAGGTCTACAGTGAGGTCCACTTCACACTGGCCAAGCCCCCAT
CAGTGGTCAACAGGACGGCCAGGCCTTTTGGGATCCAGGCGCCAGGGGGCACCAGCCAGATGGAGAGGAG
CCCCATGCTAGAGAGACGACATTTTGGGGAGAAGGCCCCGGCTCCCCAGCCCCCCAGTTTGCCAGACAGG
AGCCCCCGGCCACAGAGACACATAATGTCCCGCAGCCCCATGGTGGAAAGGAGGATGATGGGGCAGCGAA
GCCCGGCCTCAGAGAGACGCCCCTTGGGGAACTTCACTGCACCCCCCACCTACACTGAGACCTTGTCCAC
AGCCCCTCTGGCTTCCTGGGTGAGGTCTCCTCCCTCATATTCTGTCCTGTATCCCAGCTCCGACCCCAAG
TCTTCTCATCTGAAGGGCCAGGCGGTTCCTGCCAGCAAGACGGGCATTCTGGAGGAGTCGATGGCCCGCC
GGGGCAGCCGCAAATCCATGTTTACTTTCGTGGAGAAGCCCAAGGTGACCCCGAATCCAGACTTGCTGGA
TCTGGTACAGACAGCGGATGAGAAGCGGCGGCAGAGGGACCAGGGGGAGGTAGGCGTGGAGGAGGAGCCC
TTCGCACTGGGGGCCGAGGCCTCCAACTTCCAGCAGGAGCCAGCACCTCGTGACAGGGCCAGCCCCGCGG
CGGCGGAGGAGGTGGTACCAGAGTGGGCCTCCTGCCTCAAGTCACCCCGCATCCAGGCCAAGCCGAAGCC
CAAACCCAACCAGAACCTCTCCGAGGCCTCTGGGAAGGGAGCTGAGCTCTACGCCCGCCGCCAGTCACGG
ATGGAGAAATATGTCATCGAGTCTTCAAGCCACACGCCAGAGCTGGCCCGCTGCCCATCACCTACCATGT
CCCTGCCTTCCTCCTGGAAATACCCCACTAACGCCCCCGGGGCCTTCCGAGTGGCATCCCGAAGCCCAGC
CCGGACCCCGCCTGCCTCCCTCTACCATGGCTACCTGCCTGAGAACGGGGTCCTGCGCCCAGAGCCCACC
AAGCAGCCGCCATACCAGCTGCGCCCCTCGCTCTTTGTCCTCTCACCTATCAAGGAGCCTGCCAAGGTCT
CACCAAGAGCTGCCTCGCCCGCCAAGCCCAGCTCCTTGGACCTGGTGCCCAACCTGCCCAAGGGGGCTCT
CCCTCCATCTCCTGCCCTGCCTCGGCCCTCGCGCTCCTCACCGGGCCTCTACACCTCCCCCGGCCAGGAC
AGCCTGCAGCCCACTGCCGTGAGCCCTCCTTACGGCGGTGACATCTCCCCCGTGTCTCCCTCCAGGGCGT
GGTCTCCCCGAGCCAAGCAGGCCCCCAGGCCCTCCTTCTCTACCCGGAACGCCGGGATCGAGGCTCAGGT
GTGGAAGCCTTCCTTCTGCTTCAAGTAA

Translation (685 aa):
MEGYSEEASLLRHLEKVASEEEEVPLVVYLKENAALLTANGLHLSQNREAQQSSPAPPPAEVHSPAADVN
QNLASPSATLTTPTSNSSHNPPATDVNQNPPATVVPQSLPLSSIQQNSSEAQLPSNGTGPASKPSTLCAD
GQPQAPAEEVRCSTLLIDKVSTPATTTSTFSREATLIPSSRPPASDFMSSSLLIDIQPNTLVVSADQEMS
GRAAATTPTKVYSEVHFTLAKPPSVVNRTARPFGIQAPGGTSQMERSPMLERRHFGEKAPAPQPPSLPDR
SPRPQRHIMSRSPMVERRMMGQRSPASERRPLGNFTAPPTYTETLSTAPLASWVRSPPSYSVLYPSSDPK
SSHLKGQAVPASKTGILEESMARRGSRKSMFTFVEKPKVTPNPDLLDLVQTADEKRRQRDQGEVGVEEEP
FALGAEASNFQQEPAPRDRASPAAAEEVVPEWASCLKSPRIQAKPKPKPNQNLSEASGKGAELYARRQSR
MEKYVIESSSHTPELARCPSPTMSLPSSWKYPTNAPGAFRVASRSPARTPPASLYHGYLPENGVLRPEPT
KQPPYQLRPSLFVLSPIKEPAKVSPRAASPAKPSSLDLVPNLPKGALPPSPALPRPSRSSPGLYTSPGQD
SLQPTAVSPPYGGDISPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQVWKPSFCFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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