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Report for CCDS54971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54971.1 Public Homo sapiens 6 KIAA0319 24 110 108 CCDS HistoryNCBI Gene:9856Re-query CCDS DB by CCDS ID:54971.1Re-query CCDS DB by GeneID:9856See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 54971.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000537886.5 ENSP00000439700.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537886.5Link to Ensembl Protein Viewer:ENSP00000439700.1Re-query CCDS DB by Nucleotide ID:ENST00000537886Re-query CCDS DB by Protein ID:ENSP00000439700
Original member Current member NCBI NM_001168377.2 NP_001161849.1 Accepted alive Link to Nucleotide Sequence:NM_001168377.2Link to Protein Sequence:NP_001161849.1Re-query CCDS DB by Nucleotide ID:NM_001168377Re-query CCDS DB by Protein ID:NP_001161849Link to BLAST:NP_001161849.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161849.1 1011 Q5VV43-4 1011 100% 0 0

Chromosomal Locations for CCDS 54971.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 24547165 24547343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24556607 24556729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24559013 24559155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24563359 24563518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24564202 24564340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24566597 24566748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24568781 24568929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24569903 24570035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24572575 24572698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24576368 24576596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24578110 24578242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24579858 24579950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24580926 24581013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24582249 24582346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24583604 24583702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24588593 24588785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24595873 24596618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24601049 24601103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3036 nt):
ATGGCGCCCCCCACAGGTGTGCTCTCTTCATTGCTGCTGCTGGTGACAATTGCAGGTTGTGCCCGTAAGC
AGTGCAGCGAGGGGAGGACATATTCCAATGCAGTCATTTCACCTAACTTGGAAACCACCAGAATCATGCG
GGTGTCTCACACCTTCCCTGTCGTAGACTGCACGGCCGCTTGCTGTGACCTGTCCAGCTGTGACCTGGCC
TGGTGGTTCGAGGGCCGCTGCTACCTGGTGAGCTGCCCCCACAAAGAGAACTGTGAGCCCAAGAAGATGG
GCCCCATCAGGTCTTATCTCACTTTTGTGCTCCGGCCTGTTCAGAGGCCTGCACAGCTGCTGGACTATGG
GGACATGATGCTGAACAGGGGCTCCCCCTCGGGGATCTGGGGGGACTCACCTGAGGATATCAGAAAGGAC
TTGACCTTTCTAGGCAAAGATTGGGGCCTAGAGGAGATGTCTGAGTACTCAGATGACTACCGGGAGCTGG
AGAAGGACCTCTTGCAACCCAGTGGCAAGCAGGAGCCCAGAGGGAGTGCCGAGTACACGGACTGGGGCCT
ACTGCCGGGCAGCGAGGGGGCCTTCAACTCCTCTGTTGGAGACAGTCCTGCGGTGCCAGCGGAGACGCAG
CAGGACCCTGAGCTCCATTACCTGAATGAGTCGGCTTCAACCCCTGCCCCAAAACTCCCTGAGAGAAGTG
TGTTGCTTCCCTTGCCGACTACTCCATCTTCAGGAGAGGTGTTGGAGAAAGAAAAGGCTTCTCAGCTCCA
GGAACAATCCAGCAACAGCTCTGGAAAAGAGGTTCTAATGCCTTCCCATAGTCTTCCTCCGGCAAGCCTG
GAGCTCAGCTCAGTCACCGTGGAGAAAAGCCCAGTGCTCACAGTCACCCCGGGGAGTACAGAGCACAGCA
TCCCAACACCTCCCACTAGCGCAGCCCCCTCTGAGTCCACCCCATCTGAGCTACCCATATCTCCTACCAC
TGCTCCCAGGACAGTGAAAGAACTTACGGTATCGGCTGGAGATAACCTAATTATAACTTTACCCGACAAT
GAAGTTGAACTGAAGGCCTTTGTTGCGCCAGCGCCACCTGTAGAAACAACCTACAACTATGAATGGAATT
TAATAAGCCACCCCACAGACTACCAAGGTGAAATAAAACAAGGACACAAGCAAACTCTTAACCTCTCTCA
ATTGTCCGTCGGACTTTATGTCTTCAAAGTCACTGTTTCTAGTGAAAACGCCTTTGGAGAAGGATTTGTC
AATGTCACTGTTAAGCCTGCCAGAAGAGTCAACCTGCCACCTGTAGCAGTTGTTTCTCCCCAACTGCAAG
AGCTCACTTTGCCTTTGACGTCAGCCCTCATTGATGGCAGCCAAAGTACAGATGATACTGAAATAGTGAG
TTATCATTGGGAAGAAATAAACGGGCCCTTCATAGAAGAGAAGACTTCAGTTGACTCTCCCGTCTTACGC
TTGTCTAACCTTGATCCTGGTAACTATAGTTTCAGGTTGACTGTTACAGACTCGGACGGAGCCACTAACT
CTACAACTGCAGCCCTAATAGTGAACAATGCTGTGGACTACCCACCAGTTGCTAATGCAGGACCAAATCA
CACCATAACTTTGCCCCAAAACTCCATCACTTTGAATGGAAACCAGAGCAGTGACGATCACCAGATTGTC
CTCTATGAGTGGTCCCTGGGTCCTGGGAGTGAGGGCAAACATGTGGTCATGCAGGGAGTACAGACGCCAT
ACCTTCATTTATCTGCAATGCAGGAAGGAGATTATACATTTCAGCTGAAGGTGACAGATTCTTCAAGGCA
ACAGTCTACTGCTGTGGTGACTGTGATTGTCCAGCCTGAAAACAATAGACCTCCAGTGGCTGTGGCCGGC
CCTGATAAAGAGCTGATCTTCCCAGTGGAAAGTGCTACCCTGGATGGGAGCAGCAGCAGCGATGACCACG
GCATTGTCTTCTACCACTGGGAGCACGTCAGAGGCCCCAGTGCAGTGGAGATGGAAAATATTGACAAAGC
AATAGCCACTGTGACTGGTCTCCAGGTGGGGACCTACCACTTCCGTTTGACAGTGAAAGACCAGCAGGGA
CTGAGCAGCACGTCCACCCTCACTGTGGCTGTGAAGAAGGAAAATAATAGTCCTCCCAGAGCCCGGGCTG
GTGGCAGACATGTTCTTGTGCTTCCCAATAATTCCATTACTTTGGATGGTTCAAGGTCTACTGATGACCA
AAGAATTGTGTCCTATCTGTGGATCCGGGATGGCCAGAGTCCAGCAGCTGGAGATGTCATCGATGGCTCT
GACCACAGTGTGGCTCTGCAGCTTACGAATCTGGTGGAGGGGGTGTACACTTTCCACTTGCGAGTCACCG
ACAGTCAGGGGGCCTCGGACACAGACACTGCCACTGTGGAAGTGCAGCCAGACCCTAGGAAGAGTGGCCT
GGTGGAGCTGACCCTGCAGGTTGGTGTTGGGCAGCTGACAGAGCAGCGGAAGGACACCCTTGTGAGGCAG
CTGGCTGTGCTGCTGAACGTGCTGGACTCGGACATTAAGGTCCAGAAGATTCGGGCCCACTCGGATCTCA
GCACCGTGATTGTGTTTTATGTACAGAGCAGGCCGCCTTTCAAGGTTCTCAAAGCTGCTGAAGTGGCCCG
AAATCTGCACATGCGGCTCTCAAAGGAGAAGGCTGACTTCTTGCTTTTCAAGGTCTTGAGGGTTGATACA
GCAGGTTGCCTTCTGAAGTGTTCTGGCCATGGTCACTGCGACCCCCTCACAAAGCGCTGCATTTGCTCTC
ACTTATGGATGGAGAACCTTATACAGCGTTATATCTGGGATGGAGAGAGCAACTGTGGTATCAAGCACCG
AAGCACAGAGCACAACTCCAGCCTGATGGTATCCGAGTCTGAGTTTGACAGTGACCAGGACACAATCTTC
AGCCGAGAAAAGATGGAGAGAGGGAATCCAAAGGTTTCCATGAATGGTTCCATCAGAAATGGAGCTTCCT
TCAGTTATTGCTCAAAGGACAGATAA

Translation (1011 aa):
MAPPTGVLSSLLLLVTIAGCARKQCSEGRTYSNAVISPNLETTRIMRVSHTFPVVDCTAACCDLSSCDLA
WWFEGRCYLVSCPHKENCEPKKMGPIRSYLTFVLRPVQRPAQLLDYGDMMLNRGSPSGIWGDSPEDIRKD
LTFLGKDWGLEEMSEYSDDYRELEKDLLQPSGKQEPRGSAEYTDWGLLPGSEGAFNSSVGDSPAVPAETQ
QDPELHYLNESASTPAPKLPERSVLLPLPTTPSSGEVLEKEKASQLQEQSSNSSGKEVLMPSHSLPPASL
ELSSVTVEKSPVLTVTPGSTEHSIPTPPTSAAPSESTPSELPISPTTAPRTVKELTVSAGDNLIITLPDN
EVELKAFVAPAPPVETTYNYEWNLISHPTDYQGEIKQGHKQTLNLSQLSVGLYVFKVTVSSENAFGEGFV
NVTVKPARRVNLPPVAVVSPQLQELTLPLTSALIDGSQSTDDTEIVSYHWEEINGPFIEEKTSVDSPVLR
LSNLDPGNYSFRLTVTDSDGATNSTTAALIVNNAVDYPPVANAGPNHTITLPQNSITLNGNQSSDDHQIV
LYEWSLGPGSEGKHVVMQGVQTPYLHLSAMQEGDYTFQLKVTDSSRQQSTAVVTVIVQPENNRPPVAVAG
PDKELIFPVESATLDGSSSSDDHGIVFYHWEHVRGPSAVEMENIDKAIATVTGLQVGTYHFRLTVKDQQG
LSSTSTLTVAVKKENNSPPRARAGGRHVLVLPNNSITLDGSRSTDDQRIVSYLWIRDGQSPAAGDVIDGS
DHSVALQLTNLVEGVYTFHLRVTDSQGASDTDTATVEVQPDPRKSGLVELTLQVGVGQLTEQRKDTLVRQ
LAVLLNVLDSDIKVQKIRAHSDLSTVIVFYVQSRPPFKVLKAAEVARNLHMRLSKEKADFLLFKVLRVDT
AGCLLKCSGHGHCDPLTKRCICSHLWMENLIQRYIWDGESNCGIKHRSTEHNSSLMVSESEFDSDQDTIF
SREKMERGNPKVSMNGSIRNGASFSYCSKDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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