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Report for CCDS55025.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55025.1 Public Homo sapiens 6 COL21A1 24 110 108 CCDS HistoryNCBI Gene:81578Re-query CCDS DB by CCDS ID:55025.1Re-query CCDS DB by GeneID:81578See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55025.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000244728.10 ENSP00000244728.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000244728.10Link to Ensembl Protein Viewer:ENSP00000244728.5Re-query CCDS DB by Nucleotide ID:ENST00000244728Re-query CCDS DB by Protein ID:ENSP00000244728
Original member Current member NCBI NM_001318751.2 NP_001305680.1 Accepted alive Link to Nucleotide Sequence:NM_001318751.2Link to Protein Sequence:NP_001305680.1Re-query CCDS DB by Nucleotide ID:NM_001318751Re-query CCDS DB by Protein ID:NP_001305680Link to BLAST:NP_001305680.1
Original member Current member NCBI NM_030820.4 NP_110447.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030820.4Link to Protein Sequence:NP_110447.2Re-query CCDS DB by Nucleotide ID:NM_030820Re-query CCDS DB by Protein ID:NP_110447Link to BLAST:NP_110447.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305680.1 957 Q96P44-1 957 100% 0 0
NP_110447.2 957 Q96P44-1 957 100% 0 0

Chromosomal Locations for CCDS 55025.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 56057657 56057844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56059165 56059242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56060018 56060218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56060741 56060795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56060891 56061037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56061649 56061681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56064578 56064622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56067295 56067330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56069046 56069117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56070745 56070798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56074232 56074285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56075479 56075532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56077529 56077573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56101472 56101525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56124062 56124115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56124239 56124292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56125567 56125620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56126096 56126149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56141785 56141838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56141930 56141983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56156887 56156949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56164423 56164506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56164814 56164822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56166906 56166983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56168124 56168297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56170649 56170865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56170960 56171128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56179578 56180129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56182531 56182618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2874 nt):
ATGGCTCACTATATTACATTTCTCTGCATGGTTTTGGTGCTGCTTCTTCAGAATTCTGTGTTAGCTGAAG
ATGGGGAAGTAAGATCAAGTTGTCGTACTGCTCCGACAGATTTAGTTTTCATCTTAGATGGCTCTTATAG
TGTTGGCCCAGAAAACTTTGAAATAGTGAAAAAGTGGCTTGTCAATATCACAAAAAACTTTGACATAGGG
CCGAAGTTTATTCAAGTTGGAGTGGTTCAATATAGTGACTACCCTGTGCTGGAGATTCCTCTCGGAAGCT
ATGATTCAGGAGAACATTTGACGGCAGCAGTGGAATCCATACTCTACTTAGGAGGAAACACAAAGACAGG
GAAGGCCATCCAGTTTGCGCTCGATTACCTTTTTGCCAAGTCCTCACGATTTCTGACTAAGATAGCAGTG
GTACTTACGGATGGCAAATCCCAAGATGACGTCAAGGATGCAGCTCAAGCAGCAAGAGATAGTAAGATAA
CATTATTTGCTATTGGTGTTGGTTCAGAAACAGAAGATGCCGAACTTAGAGCTATTGCCAACAAGCCTTC
GTCTACTTATGTGTTTTATGTGGAAGACTATATTGCAATATCCAAAATAAGGGAAGTGATGAAGCAGAAA
CTTTGTGAAGAATCTGTCTGTCCAACACGAATTCCAGTGGCAGCTCGTGATGAAAGGGGATTTGATATTC
TTTTAGGTTTAGATGTAAATAAAAAGGTTAAGAAAAGAATACAGCTTTCACCAAAAAAGATAAAAGGATA
TGAAGTAACATCAAAAGTTGATTTATCAGAACTCACAAGCAATGTTTTCCCAGAAGGTCTTCCTCCATCA
TATGTATTTGTGTCTACTCAAAGATTTAAAGTCAAGAAAATTTGGGATTTATGGAGAATATTAACTATTG
ATGGAAGGCCACAAATAGCAGTTACCTTAAATGGTGTGGACAAAATCTTATTATTTACAACAACCAGCGT
AATTAATGGCTCACAAGTGGTTACCTTTGCTAACCCTCAAGTTAAGACGTTGTTTGATGAAGGCTGGCAC
CAAATTCGTCTCTTAGTAACAGAACAAGATGTGACTTTGTATATTGATGACCAACAAATTGAAAACAAGC
CCTTACATCCAGTTTTAGGGATCTTGATCAATGGGCAAACCCAAATTGGAAAATATTCTGGAAAAGAAGA
AACTGTTCAGTTTGATGTCCAAAAGTTGCGAATCTACTGTGACCCAGAACAGAACAACCGGGAGACAGCA
TGTGAGATTCCTGGATTTAATGGAGAGTGCCTTAATGGTCCCAGTGATGTAGGTTCAACTCCAGCTCCCT
GTATTTGTCCTCCGGGAAAACCAGGACTTCAAGGCCCCAAAGGTGACCCTGGACTGCCTGGGAACCCTGG
CTACCCTGGACAACCTGGTCAAGATGGTAAGCCTGGATATCAGGGAATTGCAGGGACACCAGGTGTTCCA
GGATCTCCAGGAATACAAGGAGCTCGAGGACTACCAGGTTACAAAGGAGAACCAGGGCGAGATGGTGACA
AGGGTGATCGTGGACTTCCTGGTTTTCCTGGGCTTCATGGCATGCCAGGATCAAAGGGTGAAATGGGTGC
CAAAGGAGACAAAGGATCACCTGGATTTTATGGCAAAAAGGGTGCAAAAGGTGAAAAGGGGAATGCTGGC
TTCCCTGGCCTCCCTGGACCTGCTGGAGAACCAGGAAGACATGGAAAGGATGGATTAATGGGTAGTCCCG
GTTTCAAGGGAGAAGCAGGATCCCCTGGTGCTCCGGGGCAGGATGGAACACGGGGAGAGCCTGGAATCCC
AGGATTTCCTGGAAACCGAGGATTAATGGGCCAAAAGGGAGAAATTGGGCCTCCAGGACAGCAAGGAAAA
AAAGGAGCCCCAGGGATGCCTGGTTTAATGGGAAGCAATGGCTCACCAGGCCAGCCTGGAACACCGGGAT
CTAAGGGAAGCAAAGGTGAACCTGGAATTCAAGGGATGCCTGGGGCTTCTGGGCTCAAGGGAGAACCAGG
AGCAACGGGTTCCCCAGGAGAACCAGGATACATGGGTTTACCCGGGATTCAAGGAAAAAAGGGGGACAAA
GGAAATCAAGGTGAAAAAGGTATTCAGGGTCAAAAGGGAGAAAATGGAAGACAGGGAATTCCAGGGCAAC
AGGGAATTCAAGGCCATCATGGTGCAAAAGGAGAGAGAGGTGAAAAGGGAGAACCTGGTGTCCGAGGTGC
CATTGGATCAAAAGGAGAATCTGGGGTGGATGGCTTGATGGGGCCCGCAGGTCCTAAGGGGCAACCTGGG
GATCCAGGTCCTCAGGGACCCCCAGGTTTGGATGGGAAGCCCGGAAGAGAGTTTTCAGAACAATTTATTC
GACAAGTTTGCACAGATGTAATAAGAGCCCAGCTACCAGTCTTACTTCAGAGTGGAAGAATTAGAAATTG
TGATCATTGCCTGTCCCAACATGGCTCCCCGGGTATTCCTGGGCCACCTGGTCCGATAGGCCCAGAGGGT
CCCAGAGGATTACCTGGTTTGCCAGGAAGAGATGGTGTTCCTGGATTAGTGGGTGTCCCTGGACGTCCAG
GTGTCAGAGGATTAAAAGGCCTACCAGGAAGAAATGGGGAAAAAGGGAGCCAAGGGTTTGGGTATCCTGG
AGAACAAGGTCCTCCTGGTCCCCCAGGTCCAGAGGGCCCTCCTGGAATAAGCAAAGAAGGTCCTCCAGGA
GACCCAGGTCTCCCTGGCAAAGATGGAGACCATGGAAAACCTGGAATCCAAGGGCAACCAGGCCCCCCAG
GCATCTGCGACCCATCACTATGTTTTAGTGTAATTGCCAGAAGAGATCCGTTCAGAAAAGGACCAAACTA
TTAG

Translation (957 aa):
MAHYITFLCMVLVLLLQNSVLAEDGEVRSSCRTAPTDLVFILDGSYSVGPENFEIVKKWLVNITKNFDIG
PKFIQVGVVQYSDYPVLEIPLGSYDSGEHLTAAVESILYLGGNTKTGKAIQFALDYLFAKSSRFLTKIAV
VLTDGKSQDDVKDAAQAARDSKITLFAIGVGSETEDAELRAIANKPSSTYVFYVEDYIAISKIREVMKQK
LCEESVCPTRIPVAARDERGFDILLGLDVNKKVKKRIQLSPKKIKGYEVTSKVDLSELTSNVFPEGLPPS
YVFVSTQRFKVKKIWDLWRILTIDGRPQIAVTLNGVDKILLFTTTSVINGSQVVTFANPQVKTLFDEGWH
QIRLLVTEQDVTLYIDDQQIENKPLHPVLGILINGQTQIGKYSGKEETVQFDVQKLRIYCDPEQNNRETA
CEIPGFNGECLNGPSDVGSTPAPCICPPGKPGLQGPKGDPGLPGNPGYPGQPGQDGKPGYQGIAGTPGVP
GSPGIQGARGLPGYKGEPGRDGDKGDRGLPGFPGLHGMPGSKGEMGAKGDKGSPGFYGKKGAKGEKGNAG
FPGLPGPAGEPGRHGKDGLMGSPGFKGEAGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKGEIGPPGQQGK
KGAPGMPGLMGSNGSPGQPGTPGSKGSKGEPGIQGMPGASGLKGEPGATGSPGEPGYMGLPGIQGKKGDK
GNQGEKGIQGQKGENGRQGIPGQQGIQGHHGAKGERGEKGEPGVRGAIGSKGESGVDGLMGPAGPKGQPG
DPGPQGPPGLDGKPGREFSEQFIRQVCTDVIRAQLPVLLQSGRIRNCDHCLSQHGSPGIPGPPGPIGPEG
PRGLPGLPGRDGVPGLVGVPGRPGVRGLKGLPGRNGEKGSQGFGYPGEQGPPGPPGPEGPPGISKEGPPG
DPGLPGKDGDHGKPGIQGQPGPPGICDPSLCFSVIARRDPFRKGPNY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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