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Report for CCDS55028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55028.1 Public Homo sapiens 6 FAM135A 24 110 108 CCDS HistoryNCBI Gene:57579Re-query CCDS DB by CCDS ID:55028.1Re-query CCDS DB by GeneID:57579See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55028.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370479.7 ENSP00000359510.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370479.7Link to Ensembl Protein Viewer:ENSP00000359510.4Re-query CCDS DB by Nucleotide ID:ENST00000370479Re-query CCDS DB by Protein ID:ENSP00000359510
Original member Current member EBI ENST00000418814.7 ENSP00000410768.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000418814.7Link to Ensembl Protein Viewer:ENSP00000410768.2Re-query CCDS DB by Nucleotide ID:ENST00000418814Re-query CCDS DB by Protein ID:ENSP00000410768
Original member Current member NCBI NM_001162529.3 NP_001156001.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001162529.3Link to Protein Sequence:NP_001156001.1Re-query CCDS DB by Nucleotide ID:NM_001162529Re-query CCDS DB by Protein ID:NP_001156001Link to BLAST:NP_001156001.1
Original member Current member NCBI NM_001351600.2 NP_001338529.1 Accepted alive Link to Nucleotide Sequence:NM_001351600.2Link to Protein Sequence:NP_001338529.1Re-query CCDS DB by Nucleotide ID:NM_001351600Re-query CCDS DB by Protein ID:NP_001338529Link to BLAST:NP_001338529.1
Original member Current member NCBI NM_001351602.2 NP_001338531.1 Accepted alive Link to Nucleotide Sequence:NM_001351602.2Link to Protein Sequence:NP_001338531.1Re-query CCDS DB by Nucleotide ID:NM_001351602Re-query CCDS DB by Protein ID:NP_001338531Link to BLAST:NP_001338531.1
Original member Current member NCBI NM_001351607.2 NP_001338536.1 Accepted alive Link to Nucleotide Sequence:NM_001351607.2Link to Protein Sequence:NP_001338536.1Re-query CCDS DB by Nucleotide ID:NM_001351607Re-query CCDS DB by Protein ID:NP_001338536Link to BLAST:NP_001338536.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156001.1 1515 Q9P2D6-1 1515 100% 0 0
NP_001338529.1 1515 Q9P2D6-1 1515 100% 0 0
NP_001338531.1 1515 Q9P2D6-1 1515 100% 0 0
NP_001338536.1 1515 Q9P2D6-1 1515 100% 0 0

Chromosomal Locations for CCDS 55028.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 70428343 70428419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70452492 70452571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70475410 70475549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70475663 70475733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70477159 70477332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70480901 70481027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70482001 70482154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70491034 70491083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70502636 70502791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70522513 70522586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70523967 70524121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70524343 70526698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70528292 70528452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70533160 70533251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70533757 70533854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70536260 70536411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70538291 70538401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70556750 70556863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70559716 70559921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4548 nt):
ATGACTGAAGTTCAAGCAATGGTAGAATTCTCTGTGGAGCTAAACAAGTTCTACAATGTGGATTTGTTTC
AGAGAGGTTTTTACCAGATTCGTGCTTCTATGAAAATTCCATCAAGAATTCCCCACAGAGTAGAAGCTAG
TTTGTTGCATGCAACAGGTATGACTTTAGCCTTTCCAGCCTCAGTTCATGATTCTCTAATTTGCAGTAAA
ACATTTCAAATTTTGTACAAAAATGAAGAGGTTGTTTTAAATGATGTTATGATCTTCAAAGTAAAAATGC
TATTGGATGAAAGAAAGATTGAAGAAACCCTTGAGGAAATGAATTTTCTATTATCCTTGGATCTACACTT
CACAGATGGAGATTATTCGGCAGATGATCTGAATGCCTTGCAACTAATAAGTAGCCGAACATTGAAGCTG
CACTTTAGCCCCCATAGAGGCCTTCATCATCATGTTAATGTTATGTTTGATTACTTCCACCTTTCTGTTG
TGTCTGTTACAGTTCATGCATCATTGGTTGCACTACACCAGCCACTAATAAGCTTTCCTCGCCCTGTGAA
GACAACTTGGTTAAATAGAAATGCACCAGCACAAAACAAAGATTCCGTGATTCCTACTCTTGAAAGTGTG
GTCTTTGGTATTAACTACACAAAACAGTTATCACCAGATGGTTGTAGCTTCATCATTGCAGACTCCTTCC
TACATCATGCGTATCGTTTTCATTATACACTTTGTGCCACTTTGCTGCTAGCCTTCAAGGGATTGCACAG
CTACTTCATTACAGTAACAGAAGAGATTCCTTCTTGTCAGAAACTAGAACTGGAGGAAATGGATGTAGAA
GCTCGACTTACTGAACTATGTGAAGAAGTTAAGAAAATAGAGAATCCTGATGAACTGGCAGAACTTATAA
ATATGAATCTTGCGCAACTTTGCTCACTTTTGATGGCTTTATGGGGACAGTTTCTGGAAGTTATAACGCT
ACACGAAGAACTAAGAATATTATTAGCACAAGAGCACCATACTTTGAGGGTACGCAGATTTTCTGAGGCA
TTCTTTTGTTTTGAGCATCCAAGAGAAGCTGCCATTGCATACCAGGAACTTCATGCTCAGAGTCATCTAC
AGATGTGCACCGCTATCAAAAATACTTCCTTCTGCAGTTCTCTTCCACCCTTACCTATTGAATGTAGTGA
ATTAGATGGAGATCTCAATTCATTACCTATAATCTTTGAAGATAGGTATTTAGATTCAGTTACTGAAGAC
TTAGATGCACCCTGGATGGGAATTCAGAATCTTCAGAGATCAGAGTCCAGTAAAATGGATAAATATGAGA
CTGAAGAAAGCTCTGTAGCAGGACTTTCTAGCCCAGAGTTGAAAGTCAGACCTGCTGGTGCCTCCAGTAT
TTGGTATACAGAAGGTGAAAAGCAGCTAACAAAATCTCTAAAAGGAAAGAATGAAGAATCAAATAAATCC
AAAGTTAAGGTTACTAAGCTTATGAAAACAATGAAATCTGAAAACACAAAAAAATTAATAAAACAGAACT
CTAAGGATTCTGTGGTTTTGGTAGGCTACAAATGTTTGAAAAGTACAGCATCAAATGATCTCATTAAATG
CTTTGAAGGCAATCCTTCACATAGTCAGAAGGAAGGTCTGGATCCCACAATATGTGGATATAATTTTGAC
CCAAAGACCTACATGAGACAGACAAGTCAAAAGGAAGCTAGCTGTTTGCCAACTAATACAGAGAGAACTG
AACAAAAGTCTCCAGATATTGAAAATGTTCAACCAGACCAGTTTGATCCTTTGAACTCTGGCAACCTAAA
TCTTTGTGCAAATTTGTCCATTTCAGGTAAACTTGATATCTCCCAGGACGATAGTGAAATTACACAAATG
GAACACAATCTGGCATCCAGAAGGTCATCAGACGATTGCCATGATCATCAAACAACCCCATCTTTGGGAG
TTAGAACAATTGAAATAAAGCCCAGTAATAAAGATCCTTTCAGTGGAGAGAATATAACTGTCAAACTAGG
ACCTTGGACAGAGCTTCGACAAGAGGAAATACTTGTGGATAATTTACTACCCAACTTTGAGTCCTTAGAA
TCTAATGGTAAATCTAAATCTATAGAAATAACATTTGAAAAGGAAGCTTTGCAAGAAGCAAAGTGTCTTT
CTATTGGAGAATCATTAACTAAATTACGAAGTAATCTACCTGCCCCTTCTACAAAAGAATATCATGTTGT
AGTAAGTGGAGATACAATTAAGTTACCAGATATTAGTGCCACATATGCCTCATCTAGATTTTCAGATTCA
GGTGTTGAAAGTGAACCGAGTTCTTTTGCGACACATCCAAACACTGATTTAGTCTTTGAAACTGTGCAAG
GGCAAGGTCCTTGCAATAGTGAAAGATTATTTCCTCAGCTTTTGATGAAACCTGATTATAATGTAAAATT
TTCATTAGGAAATCATTGTACTGAGAGTACAAGTGCTATAAGTGAAATACAGTCATCTTTGACATCCATA
AACTCTCTACCCTCCGATGATGAACTGTCACCTGATGAAAATTCTAAGAAATCTGTTGTACCTGAATGCC
ATCTAAATGATAGCAAAACTGTATTAAATCTAGGAACGACTGATTTGCCAAAATGTGATGATACTAAAAA
GTCAAGTATCACTTTGCAACAGCAGAGTGTTGTATTTTCAGGGAACTTGGACAATGAAACTGTAGCAATA
CATTCCTTAAATTCAAGCATTAAAGACCCTTTACAATTTGTTTTTTCAGATGAAGAGACTTCCAGTGATG
TGAAAAGTAGTTGCAGCTCCAAACCTAACTTGGATACTATGTGTAAAGGCTTCCAGAGTCCTGATAAATC
TAATAACTCTACAGGGACAGCAATTACATTAAATTCAAAACTGATTTGTTTAGGCACTCCTTGTGTCATT
TCAGGTTCCATTTCTAGTAATACAGATGTTAGTGAAGATAGAACTATGAAAAAAAATAGTGATGTATTAA
ATCTCACACAGATGTATTCAGAAATCCCTACAGTTGAAAGTGAAACTCATCTGGGTACAAGTGATCCTTT
TTCAGCCAGTACTGATATAGTAAAGCAAGGGCTTGTGGAAAATTATTTTGGTTCTCAAAGCAGTACGGAT
ATTTCTGACACATGTGCTGTTAGCTACAGCAATGCACTTAGCCCTCAGAAGGAAACTTCTGAAAAAGAAA
TTAGTAATCTTCAGCAGGAACAGGATAAAGAGGATGAGGAGGAAGAGCAGGATCAACAAATGGTTCAAAA
TGGGTACTATGAAGAAACAGATTATTCAGCTTTGGATGGAACAATAAATGCTCACTATACAAGCAGAGAT
GAACTAATGGAAGAAAGACTTACAAAATCTGAAAAAATAAACAGTGACTATCTGAGAGATGGTATAAACA
TGCCTACTGTCTGTACTTCTGGTTGTTTGTCCTTCCCGTCTGCACCACGAGAGTCTCCTTGTAATGTTAA
ATATTCTTCCAAAAGTAAATTTGATGCCATTACAAAGCAGCCAAGCAGTACTTCTTACAACTTCACTTCT
TCGATTTCCTGGTATGAAAGTTCACCAAAACCTCAAATACAAGCCTTCCTTCAGGCAAAAGAAGAACTGA
AGCTACTAAAACTTCCTGGGTTCATGTACAGTGAAGTTCCTCTGCTGGCATCCTCAGTACCTTATTTTAG
TGTAGAAGAAGAGGATGGTTCTGAAGATGGAGTACATCTGATTGTCTGTGTGCACGGTTTAGATGGAAAC
AGTGCAGATCTCCGATTAGTAAAAACTTACATTGAACTTGGATTGCCTGGGGGAAGAATTGATTTTCTTA
TGTCTGAGAGAAATCAGAATGATACTTTTGCTGATTTTGATAGCATGACTGATCGTCTTTTGGATGAGAT
AATACAGTATATTCAGATATATAGTCTAACAGTCTCAAAAATAAGCTTTATTGGACATTCGTTGGGCAAT
TTAATAATTCGTTCAGTGCTTACAAGGCCAAGGTTTAAATATTACCTCAACAAACTTCATACCTTTCTGT
CTCTTTCTGGACCTCACCTTGGTACACTCTACAACAGCAGTGCTCTTGTTAATACAGGTCTCTGGTTTAT
GCAGAAATGGAAAAAATCAGGTTCGCTTTTGCAGCTGACATGTCGAGATCACTCAGACCCTCGCCAAACT
TTTTTATATAAGCTTAGTAACAAAGCAGGGCTTCATTATTTCAAAAATGTTGTGCTAGTGGGATCCCTAC
AGGATCGCTATGTTCCTTATCACTCTGCCCGCATTGAAATGTGTAAAACAGCTTTAAAGGACAAACAGTC
AGGACAGATCTATTCAGAAATGATCCACAACTTGCTTCGACCCGTTCTGCAAAGCAAGGACTGTAATTTG
GTTCGCTATAATGTCATCAATGCATTGCCCAATACAGCTGATTCACTCATTGGGAGAGCTGCACATATAG
CTGTTCTTGATTCGGAAATATTTTTAGAGAAATTCTTTCTGGTTGCTGCCCTCAAATATTTCCAATAG

Translation (1515 aa):
MTEVQAMVEFSVELNKFYNVDLFQRGFYQIRASMKIPSRIPHRVEASLLHATGMTLAFPASVHDSLICSK
TFQILYKNEEVVLNDVMIFKVKMLLDERKIEETLEEMNFLLSLDLHFTDGDYSADDLNALQLISSRTLKL
HFSPHRGLHHHVNVMFDYFHLSVVSVTVHASLVALHQPLISFPRPVKTTWLNRNAPAQNKDSVIPTLESV
VFGINYTKQLSPDGCSFIIADSFLHHAYRFHYTLCATLLLAFKGLHSYFITVTEEIPSCQKLELEEMDVE
ARLTELCEEVKKIENPDELAELINMNLAQLCSLLMALWGQFLEVITLHEELRILLAQEHHTLRVRRFSEA
FFCFEHPREAAIAYQELHAQSHLQMCTAIKNTSFCSSLPPLPIECSELDGDLNSLPIIFEDRYLDSVTED
LDAPWMGIQNLQRSESSKMDKYETEESSVAGLSSPELKVRPAGASSIWYTEGEKQLTKSLKGKNEESNKS
KVKVTKLMKTMKSENTKKLIKQNSKDSVVLVGYKCLKSTASNDLIKCFEGNPSHSQKEGLDPTICGYNFD
PKTYMRQTSQKEASCLPTNTERTEQKSPDIENVQPDQFDPLNSGNLNLCANLSISGKLDISQDDSEITQM
EHNLASRRSSDDCHDHQTTPSLGVRTIEIKPSNKDPFSGENITVKLGPWTELRQEEILVDNLLPNFESLE
SNGKSKSIEITFEKEALQEAKCLSIGESLTKLRSNLPAPSTKEYHVVVSGDTIKLPDISATYASSRFSDS
GVESEPSSFATHPNTDLVFETVQGQGPCNSERLFPQLLMKPDYNVKFSLGNHCTESTSAISEIQSSLTSI
NSLPSDDELSPDENSKKSVVPECHLNDSKTVLNLGTTDLPKCDDTKKSSITLQQQSVVFSGNLDNETVAI
HSLNSSIKDPLQFVFSDEETSSDVKSSCSSKPNLDTMCKGFQSPDKSNNSTGTAITLNSKLICLGTPCVI
SGSISSNTDVSEDRTMKKNSDVLNLTQMYSEIPTVESETHLGTSDPFSASTDIVKQGLVENYFGSQSSTD
ISDTCAVSYSNALSPQKETSEKEISNLQQEQDKEDEEEEQDQQMVQNGYYEETDYSALDGTINAHYTSRD
ELMEERLTKSEKINSDYLRDGINMPTVCTSGCLSFPSAPRESPCNVKYSSKSKFDAITKQPSSTSYNFTS
SISWYESSPKPQIQAFLQAKEELKLLKLPGFMYSEVPLLASSVPYFSVEEEDGSEDGVHLIVCVHGLDGN
SADLRLVKTYIELGLPGGRIDFLMSERNQNDTFADFDSMTDRLLDEIIQYIQIYSLTVSKISFIGHSLGN
LIIRSVLTRPRFKYYLNKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQT
FLYKLSNKAGLHYFKNVVLVGSLQDRYVPYHSARIEMCKTALKDKQSGQIYSEMIHNLLRPVLQSKDCNL
VRYNVINALPNTADSLIGRAAHIAVLDSEIFLEKFFLVAALKYFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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