NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55049.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55049.1 Public Homo sapiens 6 TRAF3IP2 24 110 108 CCDS HistoryNCBI Gene:10758Re-query CCDS DB by CCDS ID:55049.1Re-query CCDS DB by GeneID:10758See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55049.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368735.1 ENSP00000357724.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368735.1Link to Ensembl Protein Viewer:ENSP00000357724.1Re-query CCDS DB by Nucleotide ID:ENST00000368735Re-query CCDS DB by Protein ID:ENSP00000357724
Original member Current member EBI ENST00000368730.5 ENSP00000498323.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368730.5Link to Ensembl Protein Viewer:ENSP00000498323.1Re-query CCDS DB by Nucleotide ID:ENST00000368730Re-query CCDS DB by Protein ID:ENSP00000498323
Original member Current member EBI ENST00000368734.5 ENSP00000498345.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368734.5Link to Ensembl Protein Viewer:ENSP00000498345.1Re-query CCDS DB by Nucleotide ID:ENST00000368734Re-query CCDS DB by Protein ID:ENSP00000498345
Original member Current member NCBI NM_001164283.3 NP_001157755.1 Accepted alive Link to Nucleotide Sequence:NM_001164283.3Link to Protein Sequence:NP_001157755.1Re-query CCDS DB by Nucleotide ID:NM_001164283Re-query CCDS DB by Protein ID:NP_001157755Link to BLAST:NP_001157755.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157755.1 109 O43734-4 109 100% 0 0

Chromosomal Locations for CCDS 55049.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 111559405 111559551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111562965 111563039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111566444 111566551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (330 nt):
ATGATAATCGTAGCAATCAGCCCCAAATACAAACAGGACGTGGAAGGCGCTGAGTCGCAGCTGGACGAGG
ATGAGCATGGCTTACATACTAAGTACATTCATCGAATGATGCAGATTGAGTTCATAAAACAAGGAAGCAT
GAATTTCAGATTCATCCCTGTGCTCTTCCCAAATGCTAAGAAGGAGCATGTGCCCACCTGGCTTCAGAAC
ACTCATGTCTACAGCTGGCCCAAGAATAAAAAAAACATCCTGCTGCGGCTGCTGAGAGAGGAAGAGTATG
TGGCTCCTCCACGGGGGCCTCTGCCCACCCTTCAGGTGGTTCCCTTGTGA

Translation (109 aa):
MIIVAISPKYKQDVEGAESQLDEDEHGLHTKYIHRMMQIEFIKQGSMNFRFIPVLFPNAKKEHVPTWLQN
THVYSWPKNKKNILLRLLREEEYVAPPRGPLPTLQVVPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH