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Report for CCDS55053.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55053.1 Public Homo sapiens 6 TRDN 24 110 108 CCDS HistoryNCBI Gene:10345Re-query CCDS DB by CCDS ID:55053.1Re-query CCDS DB by GeneID:10345See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55053.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334268.9 ENSP00000333984.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334268.9Link to Ensembl Protein Viewer:ENSP00000333984.5Re-query CCDS DB by Nucleotide ID:ENST00000334268Re-query CCDS DB by Protein ID:ENSP00000333984
Original member Current member NCBI NM_006073.4 NP_006064.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006073.4Link to Protein Sequence:NP_006064.2Re-query CCDS DB by Nucleotide ID:NM_006073Re-query CCDS DB by Protein ID:NP_006064Link to BLAST:NP_006064.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006064.2 729 Q13061-1 729 100% 0 0

Chromosomal Locations for CCDS 55053.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 123218601 123218740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123221487 123221522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123224093 123224131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123252412 123252435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123255081 123255125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123255867 123255902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123259624 123259662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123260612 123260638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123265318 123265338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123267707 123267751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123269849 123269866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123271139 123271186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123272964 123273011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123273337 123273363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123274641 123274670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123278318 123278347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123279056 123279082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123316457 123316495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123331879 123331929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123337619 123337669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123352539 123352586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123366135 123366182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123375605 123375631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123377716 123377742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123377866 123377898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123381370 123381390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123382118 123382147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123388522 123388551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123393624 123393677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123438063 123438122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123438944 123439003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123464906 123464983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123497193 123497252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123503719 123503901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123512303 123512362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123516141 123516206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123530506 123530565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123547340 123547372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123548454 123548612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123570923 123571132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123636754 123636775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2190 nt):
ATGACTGAGATCACTGCTGAAGGAAATGCATCTACAACCACAACTGTGATAGACAGCAAAAATGGATCTG
TGCCCAAATCCCCCGGAAAAGTGCTGAAGAGGACAGTCACAGAAGACATAGTGACGACGTTCAGCTCCCC
TGCAGCCTGGCTTCTGGTCATTGCCCTGATAATCACGTGGTCAGCTGTTGCCATCGTTATGTTTGATTTA
GTGGATTACAAAAACTTTTCAGCAAGCTCTATTGCCAAGATTGGCTCAGATCCTTTAAAACTGGTACGTG
ATGCTATGGAGGAAACCACGGACTGGATCTATGGCTTCTTTTCTTTGTTATCTGACATCATCTCATCTGA
AGATGAAGAAGATGATGATGGTGACGAAGATACTGATAAAGGAGAAATAGATGAGCCTCCCTTGAGAAAA
AAAGAAATACACAAAGATAAGACTGAAAAACAAGAGAAACCTGAAAGGAAAATACAAACTAAAGTTACAC
ACAAAGAAAAAGAAAAAGGAAAAGAAAAAGTAAGAGAAAAAGAAAAACCTGAAAAGAAAGCAACTCACAA
GGAAAAAATTGAGAAAAAAGAAAAACCAGAAACAAAGACACTGGCGAAAGAACAGAAGAAAGCTAAGACT
GCAGAAAAGAGTGAAGAAAAGACTAAAAAGGAAGTGAAAGGTGGAAAACAGGAGAAAGTGAAGCAAACAG
CTGCAAAAGTAAAAGAAGTACAGAAAACACCATCAAAACCCAAAGAAAAGGAGGACAAAGAGAAAGCAGC
TGTGTCAAAGCATGAACAGAAAGATCAGTATGCATTCTGTCGATATATGATTGACATATTTGTCCATGGG
GATTTAAAACCAGGACAAAGCCCAGCCATTCCACCTCCCTTACCGACAGAACAAGCTTCCAGACCCACTC
CGGCATCACCTGCCCTTGAAGAAAAAGAAGGGGAAAAGAAGAAGGCTGAGAAGAAAGTTACTTCTGAAAC
AAAAAAGAAAGAAAAAGAAGATATCAAAAAGAAAAGTGAGAAGGAAACTGCCATTGATGTGGAAAAAAAA
GAGCCGGGAAAAGCTTCTGAAACCAAACAAGGGACTGTAAAAATTGCAGCACAAGCAGCAGCTAAGAAGG
ATGAAAAGAAGGAAGATTCCAAGAAAACAAAAAAACCTGCAGAAGTAGAACAACCCAAGGGAAAAAAACA
GGAAAAGAAAGAAAAACATGTGGAACCAGCAAAGTCACCAAAGAAAGAACACTCAGTTCCAAGTGACAAA
CAAGTAAAAGCAAAAACTGAACGAGCCAAAGAGGAGATTGGTGCGGTTTCAATTAAAAAAGCTGTACCTG
GAAAGAAGGAAGAGAAAACAACCAAGACAGTGGAGCAAGAAATTAGAAAAGAAAAATCTGGGAAGACTTC
TTCAATTCTGAAAGATAAAGAACCTATTAAAGGGAAAGAAGAGAAAGTTCCAGCTTCCCTAAAGGAAAAA
GAACCTGAAACTAAAAAAGATGAAAAGATGTCCAAAGCAGGCAAAGAAGTCAAGCCTAAACCTCCACAAC
TACAAGGAAAAAAGGAAGAGAAGCCAGAGCCCCAAATTAAAAAAGAAGCAAAACCAGCTATATCTGAAAA
AGTGCAAATACACAAACAAGACATAGTGAAACCAGAAAAGACTGTTTCTCATGGTAAACCAGAAGAAAAA
GTTCTCAAGCAGGTAAAAGCTGTCACAATAGAAAAAACAGCCAAGCCCAAACCAACAAAAAAAGCTGAAC
ATCGAGAAAGAGAACCTCCATCTATAAAAACAGACAAACCAAAACCAACTCCAAAAGGAACATCAGAAGT
CACAGAATCAGGAAAGAAGAAAACTGAAATATCTGAAAAAGAAAGTAAAGAAAAAGCAGACATGAAGCAT
CTTAGAGAAGAAAAAGTCTCAACAAGAAAAGAAAGTCTTCAATTACACAATGTGACAAAAGCAGAAAAAC
CTGCAAGAGTATCAAAAGATGTTGAAGATGTACCAGCTTCAAAGAAAGCTAAAGAAGGAACTGAAGATGT
GTCTCCCACAAAGCAGAAAAGTCCCATCAGTTTCTTCCAGTGTGTCTACTTGGATGGGTACAATGGCTAT
GGATTTCAGTTTCCTTTCACTCCTGCAGACCGCCCTGGAGAGAGCTCTGGTCAAGCAAATTCTCCAGGAC
AGAAGCAACAAGGACAGTAA

Translation (729 aa):
MTEITAEGNASTTTTVIDSKNGSVPKSPGKVLKRTVTEDIVTTFSSPAAWLLVIALIITWSAVAIVMFDL
VDYKNFSASSIAKIGSDPLKLVRDAMEETTDWIYGFFSLLSDIISSEDEEDDDGDEDTDKGEIDEPPLRK
KEIHKDKTEKQEKPERKIQTKVTHKEKEKGKEKVREKEKPEKKATHKEKIEKKEKPETKTLAKEQKKAKT
AEKSEEKTKKEVKGGKQEKVKQTAAKVKEVQKTPSKPKEKEDKEKAAVSKHEQKDQYAFCRYMIDIFVHG
DLKPGQSPAIPPPLPTEQASRPTPASPALEEKEGEKKKAEKKVTSETKKKEKEDIKKKSEKETAIDVEKK
EPGKASETKQGTVKIAAQAAAKKDEKKEDSKKTKKPAEVEQPKGKKQEKKEKHVEPAKSPKKEHSVPSDK
QVKAKTERAKEEIGAVSIKKAVPGKKEEKTTKTVEQEIRKEKSGKTSSILKDKEPIKGKEEKVPASLKEK
EPETKKDEKMSKAGKEVKPKPPQLQGKKEEKPEPQIKKEAKPAISEKVQIHKQDIVKPEKTVSHGKPEEK
VLKQVKAVTIEKTAKPKPTKKAEHREREPPSIKTDKPKPTPKGTSEVTESGKKKTEISEKESKEKADMKH
LREEKVSTRKESLQLHNVTKAEKPARVSKDVEDVPASKKAKEGTEDVSPTKQKSPISFFQCVYLDGYNGY
GFQFPFTPADRPGESSGQANSPGQKQQGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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