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Report for CCDS55173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55173.1 Public Homo sapiens 7 IFT56 24 110 108 CCDS HistoryNCBI Gene:79989Re-query CCDS DB by CCDS ID:55173.1Re-query CCDS DB by GeneID:79989See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55173.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343187.8 ENSP00000339135.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000343187.8Link to Ensembl Protein Viewer:ENSP00000339135.4Re-query CCDS DB by Nucleotide ID:ENST00000343187Re-query CCDS DB by Protein ID:ENSP00000339135
Original member Current member NCBI NM_001144923.3 NP_001138395.1 Accepted alive Link to Nucleotide Sequence:NM_001144923.3Link to Protein Sequence:NP_001138395.1Re-query CCDS DB by Nucleotide ID:NM_001144923Re-query CCDS DB by Protein ID:NP_001138395Link to BLAST:NP_001138395.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138395.1 523 A0AVF1-3 523 100% 0 0

Chromosomal Locations for CCDS 55173.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 139133858 139133860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139134655 139134792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139139890 139140004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139142256 139142305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139147145 139147290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139148206 139148377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139160948 139161022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139165132 139165234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139166840 139166895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139168344 139168397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139169289 139169352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139178214 139178302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139178515 139178598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139179574 139179643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139181092 139181198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139187406 139187539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139189321 139189432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGATGCTTTCAAGGGCCAAACCTGCTGTAGGCAGAGGCGTACAGCACACTGACAAAAGAAAGAAGAAAG
GTAGGAAGATTCCAAAACTAGAGGAGCTACTTTCAAAAAGAGATTTCACTGGAGCTATTACCCTGTTGGA
GGAATACGAAAATGCTACAAAAGAGGAAAATTGTAATTCTGAAGTCTGGGTGAACCTAGCTTGCACCTAC
TTCTTTCTTGGGATGTATAAACAAGCTGAAGCAGCTGGATTTAAAGCTTCAAAAAGCCGACTCCAAAACC
GCCTCCTCTTCCACTTGGCTCACAAGTTTAATGATGAGAAAAAATTGATGAGCTTTCATCAAAATCTTCA
GGATGTCACAGAAGATCAACTCAGTTTGGCCTCAATCCACTATATGCGATCTCACTACCAAGAAGCTATA
GATATATATAAGCGAATACTGCTAGATAACAGGGAATACCTTGCCCTTAATGTTTATGTGGCCCTCTGCT
ACTACAAGTTGGATTACTATGATGTGTCTCAAGAAGTTTTGGCTGTTTACCTTCAGCAAATTCCTGATAG
TACCATCGCACTCAATCTTAAAGCCTGTAACCATTTTCGCCTTTACAATGGCAGAGCAGCTGAGGCAGAA
CTCAAAAGCTTGATGGACAATGCTTCTTCATCCTTTGAATTTGCTAAAGAACTCATCAGGCACAATCTGG
TTGTTTTCCGAGGAGGTGAAGGGGCTTTGCAGGTTTTACCTCCCCTAGTTGATGTCATTCCTGAAGCTAG
GCTAAACTTGGTGATTTACTACCTTCGTCAAGATGATGTACAAGAAGCTTATAACTTAATTAAGGATCTG
GAACCTACTACTCCTCAGGAGTATATTCTCAAAGGAGTGGTCAATGCAGCCCTTGGCCAGGAAATGGGTT
CAAGGGATCATATGAAAATTGCCCAGCAGTTCTTCCAGTTGGTGGGAGGATCAGCTAGTGAATGTGATAC
AATACCAGGGAGGCAGTGCATGGCTTCCTGTTTCTTCCTGCTTAAGCAATTTGATGATGTTTTGATTTAC
CTCAACTCATTTAAGAGTTACTTCTATAATGATGACATCTTTAACTTTAATTATGCCCAAGCCAAAGCTG
CAACAGGCAATACCAGTGAGGGCGAAGAGGCGTTCCTCTTGATCCAAAGTGAGAAGATGAAAAATGATTA
CATTTACCTCAGCTGGTTAGCTCGGTGCTATATTATGAATAAGAAACCAAGACTAGCCTGGGAACTTTAT
CTTAAGATGGAAACCTCCGGCGAGTCCTTCAGTCTCTTACAGCTCATTGCTAATGACTGCTACAAGATGG
GCCAGTTTTACTATTCTGCCAAAGCTTTTGATGTCCTTGAGAGGCTGGATCCTAACCCTGAATATTGGGA
AGGCAAACGGGGTGCCTGTGTGGGCATTTTCCAGATGATCATAGCTGGGAGAGAACCCAAAGAGACCCTT
CGAGAAGTGCTCCATTTACTGAGAAGCACAGGTAACACCCAAGTAGAATACATGATCCGGATCATGAAGA
AATGGGCCAAAGAAAACAGAGTGTCCATCTAA

Translation (523 aa):
MMLSRAKPAVGRGVQHTDKRKKKGRKIPKLEELLSKRDFTGAITLLEEYENATKEENCNSEVWVNLACTY
FFLGMYKQAEAAGFKASKSRLQNRLLFHLAHKFNDEKKLMSFHQNLQDVTEDQLSLASIHYMRSHYQEAI
DIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFRLYNGRAAEAE
LKSLMDNASSSFEFAKELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDL
EPTTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLKQFDDVLIY
LNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEAFLLIQSEKMKNDYIYLSWLARCYIMNKKPRLAWELY
LKMETSGESFSLLQLIANDCYKMGQFYYSAKAFDVLERLDPNPEYWEGKRGACVGIFQMIIAGREPKETL
REVLHLLRSTGNTQVEYMIRIMKKWAKENRVSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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