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Report for CCDS55195.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55195.1 Public Homo sapiens 8 CLDN23 24 110 108 CCDS HistoryNCBI Gene:137075Re-query CCDS DB by CCDS ID:55195.1Re-query CCDS DB by GeneID:137075See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55195.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000519106.2 ENSP00000428780.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000519106.2Link to Ensembl Protein Viewer:ENSP00000428780.1Re-query CCDS DB by Nucleotide ID:ENST00000519106Re-query CCDS DB by Protein ID:ENSP00000428780
Original member Current member NCBI NM_194284.3 NP_919260.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_194284.3Link to Protein Sequence:NP_919260.2Re-query CCDS DB by Nucleotide ID:NM_194284Re-query CCDS DB by Protein ID:NP_919260Link to BLAST:NP_919260.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_919260.2 292 Q96B33 292 100% 0 0

Chromosomal Locations for CCDS 55195.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 8702399 8703277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGCGGACGCCGGTGGTGATGACGCTGGGCATGGTGTTGGCGCCCTGCGGGCTCCTGCTCAACCTGACCG
GCACCCTGGCGCCCGGCTGGCGGCTGGTGAAGGGCTTCCTGAACCAGCCAGTGGACGTGGAGTTGTACCA
GGGCCTGTGGGACATGTGTCGCGAGCAGAGCAGCCGCGAGCGCGAGTGCGGCCAGACGGACCAGTGGGGC
TACTTCGAGGCCCAGCCCGTGCTGGTGGCGCGGGCACTCATGGTCACCTCGCTGGCCGCCACGGTCCTGG
GGCTTCTGCTGGCGTCGCTGGGCGTGCGCTGCTGGCAGGACGAGCCCAACTTCGTGCTGGCAGGGCTCTC
GGGCGTCGTGCTCTTCGTCGCTGGCCTCCTCGGCCTCATCCCGGTGTCCTGGTACAACCACTTCTTGGGG
GACCGCGACGTGCTGCCCGCCCCGGCCAGCCCGGTCACGGTGCAGGTCAGCTACAGCCTGGTCCTGGGCT
ACCTGGGCAGCTGCCTCCTGCTGCTGGGCGGCTTCTCGCTGGCGCTCAGCTTCGCGCCCTGGTGCGACGA
GCGTTGTCGCCGCCGCCGCAAGGGACCCTCCGCCGGGCCTCGCCGCAGCAGCGTCAGCACCATCCAAGTG
GAGTGGCCCGAGCCCGACCTGGCGCCCGCCATCAAGTACTACAGCGACGGCCAGCACCGACCGCCGCCTG
CCCAGCACCGCAAGCCCAAGCCCAAGCCCAAGGTCGGCTTCCCCATGCCGCGGCCGCGGCCCAAGGCCTA
CACCAACTCGGTGGACGTCCTCGACGGGGAGGGGTGGGAGTCCCAGGACGCTCCCTCGTGCAGCACCCAC
CCCTGCGACAGCTCGCTGCCCTGCGACTCCGACCTCTAG

Translation (292 aa):
MRTPVVMTLGMVLAPCGLLLNLTGTLAPGWRLVKGFLNQPVDVELYQGLWDMCREQSSRERECGQTDQWG
YFEAQPVLVARALMVTSLAATVLGLLLASLGVRCWQDEPNFVLAGLSGVVLFVAGLLGLIPVSWYNHFLG
DRDVLPAPASPVTVQVSYSLVLGYLGSCLLLLGGFSLALSFAPWCDERCRRRRKGPSAGPRRSSVSTIQV
EWPEPDLAPAIKYYSDGQHRPPPAQHRKPKPKPKVGFPMPRPRPKAYTNSVDVLDGEGWESQDAPSCSTH
PCDSSLPCDSDL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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