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Report for CCDS55220.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55220.1 Public Homo sapiens 8 KCNU1 24 110 108 CCDS HistoryNCBI Gene:157855Re-query CCDS DB by CCDS ID:55220.1Re-query CCDS DB by GeneID:157855See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55220.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399881.8 ENSP00000382770.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000399881.8Link to Ensembl Protein Viewer:ENSP00000382770.3Re-query CCDS DB by Nucleotide ID:ENST00000399881Re-query CCDS DB by Protein ID:ENSP00000382770
Original member Current member NCBI NM_001031836.3 NP_001027006.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001031836.3Link to Protein Sequence:NP_001027006.2Re-query CCDS DB by Nucleotide ID:NM_001031836Re-query CCDS DB by Protein ID:NP_001027006Link to BLAST:NP_001027006.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001027006.2 1149 A8MYU2 1149 100% 0 0

Chromosomal Locations for CCDS 55220.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 36784411 36784605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36787306 36787425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36804027 36804088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36805195 36805285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36806269 36806380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36807375 36807450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36808718 36808793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36814207 36814377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36815596 36815687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36817650 36817760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36833554 36833659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36834786 36834868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36836296 36836365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36836793 36836945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36840463 36840575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36840932 36841003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36845580 36845669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36845802 36845899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36864404 36864521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36905708 36905804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36909311 36909535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36910930 36911119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36918823 36918897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36922490 36922629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36930951 36931145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36932920 36933032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36935515 36935920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3450 nt):
ATGTTTCAGACTAAGCTACGAAATGAAACTTGGGAAGACTTGCCAAAAATGTCCTGCACAACTGAGATCC
AAGCAGCATTCATTCTCTCTTCCTTTGTGACCTTCTTCAGTGGACTCATCATCCTGTTGATCTTCAGGCT
GATCTGGAGATCTGTTAAAAAATGGCAAATCATCAAGGGAACAGGAATTATCTTGGAACTGTTCACATCA
GGTACCATCGCTAGGAGCCATGTAAGAAGCCTCCACTTCCAGGGACAATTTCGTGATCATATAGAAATGT
TGCTTTCAGCCCAGACCTTTGTGGGGCAAGTGTTGGTGATCCTTGTCTTTGTACTAAGCATTGGGTCTCT
TATAATCTATTTCATCAATTCTGCTGACCCTGTTGGAAGCTGTTCATCATATGAAGACAAAACCATTCCT
ATTGATTTGGTTTTCAATGCTTTCTTTAGTTTCTATTTTGGATTGAGGTTTATGGCAGCTGATGACAAGA
TCAAGTTCTGGCTGGAGATGAATTCAATCGTAGACATCTTTACCATCCCACCAACCTTTATTTCTTATTA
TTTGAAGAGCAATTGGCTAGGTTTAAGGTTCCTAAGAGCCTTGCGCCTGCTAGAACTCCCTCAAATCTTG
CAAATTCTACGAGCCATCAAGACCAGTAACTCAGTGAAGTTTTCCAAACTGCTGTCAATAATTCTCAGTA
CCTGGTTCACAGCTGCGGGATTCATTCACCTGGTGGAAAATTCTGGTGATCCCTGGCTCAAAGGTAGAAA
TTCACAGAATATATCATATTTTGAGTCAATTTACCTGGTCATGGCAACAACGTCAACCGTTGGATTTGGA
GATGTGGTAGCCAAGACATCCTTAGGACGGACCTTCATCATGTTCTTCACACTGGGGAGTTTGATATTAT
TTGCGAACTATATACCTGAAATGGTGGAACTGTTTGCTAACAAGAGGAAATACACCAGTTCCTATGAAGC
ACTCAAAGGAAAGAAGTTTATTGTGGTCTGTGGAAACATCACTGTGGACAGTGTGACCGCTTTCCTGAGG
AATTTCCTCCGCGACAAGTCAGGAGAGATCAACACTGAAATTGTTTTCCTGGGAGAAACCCCTCCTTCTT
TGGAACTTGAAACCATATTTAAATGCTACTTGGCCTACACAACGTTCATTTCTGGATCTGCAATGAAGTG
GGAGGATCTGAGGCGAGTTGCGGTGGAATCTGCAGAGGCATGCCTGATTATAGCCAATCCTTTGTGCAGT
GATTCCCATGCTGAAGATATTTCCAACATTATGAGGGTGCTCTCTATCAAGAACTATGATTCTACCACCA
GAATCATCATACAGATACTGCAATCCCATAACAAGGTTTATCTGCCAAAGATTCCCAGCTGGAACTGGGA
CACCGGAGACAACATCATCTGCTTTGCTGAATTAAAACTTGGATTTATCGCCCAAGGCTGTTTGGTGCCA
GGCTTGTGTACCTTCCTAACATCTCTATTTGTGGAGCAAAACAAAAAGGTTATGCCTAAACAGACCTGGA
AGAAACACTTCTTGAATAGCATGAAAAACAAAATTCTGACCCAACGTCTCTCTGATGACTTTGCTGGAAT
GAGCTTTCCTGAAGTTGCCCGGCTCTGCTTTCTGAAGATGCACCTCCTGTTGATAGCCATCGAATACAAG
TCCCTCTTTACGGATGGTTTCTGTGGTCTGATACTAAATCCACCTCCACAAGTGAGGATACGTAAGAACA
CATTAGGGTTCTTTATTGCTGAAACTCCAAAGGACGTCAGAAGAGCCTTGTTTTACTGTTCAGTCTGTCA
TGATGATGTGTTCATTCCTGAGCTAATTACAAACTGTGGCTGCAAAAGCAGAAGCCGGCAGCACATCACA
GTGCCATCGGTAAAGAGAATGAAAAAATGTCTGAAGGGAATCTCCTCTCGTATATCAGGGCAGGATTCTC
CGCCAAGGGTATCTGCAAGCACTTCGAGCATATCAAACTTCACCACCAGGACTCTTCAACATGATGTAGA
ACAAGATTCTGACCAGCTTGATAGCAGTGGGATGTTTCACTGGTGCAAACCAACCTCTTTGGACAAGGTG
ACTCTGAAACGAACTGGCAAGTCAAAGTATAAGTTTCGGAACCATATTGTAGCATGTGTATTTGGAGATG
CCCACTCAGCCCCGATGGGGCTTCGGAACTTTGTAATGCCCTTGAGAGCCAGCAACTATACCAGGAAGGA
GCTGAAGGACATAGTGTTCATTGGGTCTCTGGACTATCTACAGAGAGAATGGCGATTTCTCTGGAATTTT
CCCCAGATATACATTCTGCCTGGATGTGCACTTTATTCTGGAGACCTCCATGCGGCCAACATAGAGCAAT
GCTCCATGTGTGCTGTCTTGTCCCCCCCACCCCAGCCATCAAGCAACCAGACTTTGGTAGACACAGAAGC
CATCATGGCAACCCTCACCATCGGATCCTTGCAAATTGACTCCTCCTCTGACCCGTCACCCTCAGTGTCA
GAGGAGACTCCAGGTTACACAAATGGACATAATGAGAAATCAAACTGCCGAAAAGTCCCTATCCTTACTG
AACTGAAAAATCCTTCCAACATTCACTTTATTGAACAGCTTGGTGGACTGGAAGGGTCCCTCCAAGAAAC
AAATCTGCATCTCAGCACTGCCTTTTCTACGGGCACTGTTTTTTCCGGCAGCTTCTTGGATTCTCTGCTG
GCCACGGCCTTCTACAATTATCATGTCCTGGAATTGCTTCAGATGCTGGTGACAGGAGGAGTAAGTTCTC
AGCTGGAACAACATTTAGATAAGGATAAAGTCTATGGTGTGGCAGATAGCTGCACGTCGCTCTTGTCTGG
AAGAAACCGGTGTAAGCTGGGGCTTCTGTCCTTACACGAAACCATTTTATCAGACGTTAATCCAAGAAAC
ACCTTTGGACAACTGTTCTGTGGCTCATTAGATCTTTTTGGAATCCTGTGTGTTGGCTTATACCGAATAA
TTGATGAAGAGGAGCTCAACCCAGAAAACAAAAGGTTTGTGATCACCCGGCCAGCCAATGAGTTCAAGCT
GCTGCCTTCAGATCTTGTGTTTTGTGCCATACCCTTCAGCACTGCTTGTTATAAAAGGAATGAAGAGTTC
TCATTGCAAAAGTCATATGAAATTGTAAATAAAGCATCACAGACAACAGAGACACATTCAGACACAAATT
GTCCTCCCACCATTGATTCAGTTACTGAGACATTGTATTCACCAGTCTATTCTTACCAGCCGAGAACTAA
CTCCCTCTCTTTTCCTAAGCAAATAGCATGGAATCAGAGTAGAACAAACAGTATTATATCATCTCAGATA
CCTTTAGGTGACAATGCAAAAGAAAATGAAAGGAAAACTTCAGATGAGGTTTATGATGAGGATCCCTTTG
CATATTCAGAGCCACTATAG

Translation (1149 aa):
MFQTKLRNETWEDLPKMSCTTEIQAAFILSSFVTFFSGLIILLIFRLIWRSVKKWQIIKGTGIILELFTS
GTIARSHVRSLHFQGQFRDHIEMLLSAQTFVGQVLVILVFVLSIGSLIIYFINSADPVGSCSSYEDKTIP
IDLVFNAFFSFYFGLRFMAADDKIKFWLEMNSIVDIFTIPPTFISYYLKSNWLGLRFLRALRLLELPQIL
QILRAIKTSNSVKFSKLLSIILSTWFTAAGFIHLVENSGDPWLKGRNSQNISYFESIYLVMATTSTVGFG
DVVAKTSLGRTFIMFFTLGSLILFANYIPEMVELFANKRKYTSSYEALKGKKFIVVCGNITVDSVTAFLR
NFLRDKSGEINTEIVFLGETPPSLELETIFKCYLAYTTFISGSAMKWEDLRRVAVESAEACLIIANPLCS
DSHAEDISNIMRVLSIKNYDSTTRIIIQILQSHNKVYLPKIPSWNWDTGDNIICFAELKLGFIAQGCLVP
GLCTFLTSLFVEQNKKVMPKQTWKKHFLNSMKNKILTQRLSDDFAGMSFPEVARLCFLKMHLLLIAIEYK
SLFTDGFCGLILNPPPQVRIRKNTLGFFIAETPKDVRRALFYCSVCHDDVFIPELITNCGCKSRSRQHIT
VPSVKRMKKCLKGISSRISGQDSPPRVSASTSSISNFTTRTLQHDVEQDSDQLDSSGMFHWCKPTSLDKV
TLKRTGKSKYKFRNHIVACVFGDAHSAPMGLRNFVMPLRASNYTRKELKDIVFIGSLDYLQREWRFLWNF
PQIYILPGCALYSGDLHAANIEQCSMCAVLSPPPQPSSNQTLVDTEAIMATLTIGSLQIDSSSDPSPSVS
EETPGYTNGHNEKSNCRKVPILTELKNPSNIHFIEQLGGLEGSLQETNLHLSTAFSTGTVFSGSFLDSLL
ATAFYNYHVLELLQMLVTGGVSSQLEQHLDKDKVYGVADSCTSLLSGRNRCKLGLLSLHETILSDVNPRN
TFGQLFCGSLDLFGILCVGLYRIIDEEELNPENKRFVITRPANEFKLLPSDLVFCAIPFSTACYKRNEEF
SLQKSYEIVNKASQTTETHSDTNCPPTIDSVTETLYSPVYSYQPRTNSLSFPKQIAWNQSRTNSIISSQI
PLGDNAKENERKTSDEVYDEDPFAYSEPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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