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Report for CCDS55273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55273.1 Public Homo sapiens 8 TATDN1 24 110 108 CCDS HistoryNCBI Gene:83940Re-query CCDS DB by CCDS ID:55273.1Re-query CCDS DB by GeneID:83940See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55273.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000519548.5 ENSP00000428336.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000519548.5Link to Ensembl Protein Viewer:ENSP00000428336.1Re-query CCDS DB by Nucleotide ID:ENST00000519548Re-query CCDS DB by Protein ID:ENSP00000428336
Original member Current member NCBI NM_001146160.1 NP_001139632.1 Accepted alive Link to Nucleotide Sequence:NM_001146160.1Link to Protein Sequence:NP_001139632.1Re-query CCDS DB by Nucleotide ID:NM_001146160Re-query CCDS DB by Protein ID:NP_001139632Link to BLAST:NP_001139632.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139632.1 250 Q6P1N9-2 250 100% 0 0

Chromosomal Locations for CCDS 55273.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 124488594 124488696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124493833 124493959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124495472 124495542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124504271 124504347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124508474 124508514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124508603 124508688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124515746 124515788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124515887 124516030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124518818 124518878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGATTACAGGTGGAAATCTACAAGACAGTAAAGATGCACTGCATTTGGCACAAACAAATGGTATGTTTT
TCAGTACAGTTGGATGTCATCCTACAAGATGTGGTGAATTTGAAAAGAATAACCCTGATCTTTACTTAAA
GGAGTTGCTAAATCTTGCTGAAAACAATAAAGGGAAAGTTGTGGCAATAGGAGAATGCGGACTTGATTTT
GACCGACTGCAGTTTTGTCCCAAAGATACTCAACTCAAATATTTTGAAAAACAGTTTGAACTGTCAGAAC
AAACAAAATTACCAATGTTTCTTCATTGTCGAAACTCACATGCTGAATTTTTGGACATAATGAAAAGAAA
TAGAGATCGGTGTGTAGGGGGAGTGGTGCATTCATTTGATGGTACCAAGGAAGCAGCAGCTGCTTTGATT
GACTTGGATCTTTATATAGGATTTAATGGTTGCTCACTGAAAACTGAAGCTAATTTGGAAGTTTTGAAGT
CAATTCCTAGTGAAAAATTAATGATTGAGACAGATGCACCTTGGTGTGGAGTCAAAAGTACACATGCTGG
ATCAAAATATATAAGAACTGCATTTCCTACCAAAAAGAAGTGGGAAAGTGGGCACTGCTTAAAAGACAGA
AATGAACCCTGCCATATAATTCAAATATTGGAGATAATGTCAGCAGTGAGAGATGAGGATCCACTGGAAT
TAGCCAATACACTATATAACAATACTATTAAAGTATTTTTTCCTGGAATATAA

Translation (250 aa):
MITGGNLQDSKDALHLAQTNGMFFSTVGCHPTRCGEFEKNNPDLYLKELLNLAENNKGKVVAIGECGLDF
DRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDRCVGGVVHSFDGTKEAAAALI
DLDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRTAFPTKKKWESGHCLKDR
NEPCHIIQILEIMSAVRDEDPLELANTLYNNTIKVFFPGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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