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Report for CCDS55300.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55300.1 Public Homo sapiens 9 EQTN 24 110 108 CCDS HistoryNCBI Gene:54586Re-query CCDS DB by CCDS ID:55300.1Re-query CCDS DB by GeneID:54586See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55300.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000537675.5 ENSP00000441630.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537675.5Link to Ensembl Protein Viewer:ENSP00000441630.1Re-query CCDS DB by Nucleotide ID:ENST00000537675Re-query CCDS DB by Protein ID:ENSP00000441630
Original member Current member NCBI NM_001161585.2 NP_001155057.1 Accepted alive Link to Nucleotide Sequence:NM_001161585.2Link to Protein Sequence:NP_001155057.1Re-query CCDS DB by Nucleotide ID:NM_001161585Re-query CCDS DB by Protein ID:NP_001155057Link to BLAST:NP_001155057.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155057.1 265 Q9NQ60-3 265 100% 0 0

Chromosomal Locations for CCDS 55300.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 27284723 27284972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27286209 27286362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27289672 27289731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27291019 27291063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27294316 27294402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27296613 27296738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27296980 27297055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (798 nt):
ATGAATTTTATATTGTTTATTTTTATACCTGGAGTTTTTTCCTTAAAAAGTAGCACTTTGAAGCCTACTA
TTGAAGCATTGCCTAATGTGCTACCTTTAAATGAAGATGTTAATAAGCAGGAAGAAAAGAATGAAGATCA
TACTCCCAATTATGCTCCTGCTAATGAGAAAAATGGCAATTATTATAAAGATATAAAACAATATGTGTTC
ACAACACAAAATCCAAATGGCACTGAGTCTGAAATATCTGTGAGAGCCACAACTGACCTGAATTTTGCTC
TAAAAAACGGATCAACCCCAAACGTGCCTGCATTTTGGACAATGTTAGCTAAAGCTATAAATGGAACAGC
AGTGGTCATGGATGATAAAGATCAATTATTTCACCCAATTCCAGAGTCTGATGTGAATGCTACACAGGGA
GAAAATCAGCCAGATCTAGAGGATCTGAAGATCAAAATAATGCTGGGAATCTCGTTGATGACCCTCCTCC
TCTTTGTGGTCCTCTTGGCATTCTGTAGTGCTACACTGTACAAACTGAGGCATCTGAGTTATAAAAGTTG
TGAGAGTCAGTACTCTGTCAACCCAGAGCTGGCCACGATGTCTTACTTTCATCCATCAGAAGGTGTTTCA
GATACATCCTTTTCCAAGAGTGCAGAGAGCAGCACATTTTTGGGTACCACTTCTTCAGATATGAGAAGAT
CAGGCACAAGAACATCAGAATCTAAGATAATGACGGATATCATTTCCATAGGCTCAGATAATGAGATGCA
TGAAAACGATGAGTCGGTTACCCGGTGA

Translation (265 aa):
MNFILFIFIPGVFSLKSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKNGNYYKDIKQYVF
TTQNPNGTESEISVRATTDLNFALKNGSTPNVPAFWTMLAKAINGTAVVMDDKDQLFHPIPESDVNATQG
ENQPDLEDLKIKIMLGISLMTLLLFVVLLAFCSATLYKLRHLSYKSCESQYSVNPELATMSYFHPSEGVS
DTSFSKSAESSTFLGTTSSDMRRSGTRTSESKIMTDIISIGSDNEMHENDESVTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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