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Report for CCDS55337.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55337.1 Public Homo sapiens 9 STRBP 24 110 108 CCDS HistoryNCBI Gene:55342Re-query CCDS DB by CCDS ID:55337.1Re-query CCDS DB by GeneID:55342See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55337.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360998.3 ENSP00000354271.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360998.3Link to Ensembl Protein Viewer:ENSP00000354271.3Re-query CCDS DB by Nucleotide ID:ENST00000360998Re-query CCDS DB by Protein ID:ENSP00000354271
Original member Current member NCBI NM_001171137.2 NP_001164608.1 Accepted alive Link to Nucleotide Sequence:NM_001171137.2Link to Protein Sequence:NP_001164608.1Re-query CCDS DB by Nucleotide ID:NM_001171137Re-query CCDS DB by Protein ID:NP_001164608Link to BLAST:NP_001164608.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164608.1 658 Q96SI9-2 658 100% 0 0

Chromosomal Locations for CCDS 55337.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 123125597 123125673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123128214 123128258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123132845 123132968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123136041 123136181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123136381 123136515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123139529 123139687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123146855 123147054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123147778 123147870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123158012 123158123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123158332 123158429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123159096 123159207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123160367 123160462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123160977 123161068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123169902 123170046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123173677 123173842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123179007 123179188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1977 nt):
ATGGTGAAACATTCAACAATCTATCCATCTCCGGAGGAACTTGAAGCTGTTCAGAATATGGTATCTACTG
TTGAATGTGCTCTTAAACATGTCTCAGATTGGTTGGATGAAACAAATAAAGGCACAAAAACAGAGGGTGA
GACAGAAGTGAAGAAAGATGAGGCCGGAGAAAACTATTCCAAGGATCAAGGTGGTCGGACATTGTGTGGT
GTAATGAGGATTGGCCTGGTTGCAAAAGGCTTGCTGATTAAAGATGATATGGACTTGGAGCTGGTTTTAA
TGTGCAAAGACAAACCCACAGAGACCCTGTTAAATACAGTCAAAGATAATCTTCCTATTCAGATTCAGAA
ACTCACAGAAGAGAAATATCAAGTGGAACAATGTGTAAATGAGGCATCTATTATAATTCGGAATACAAAA
GAGCCCACGCTAACTTTGAAGGTGATACTTACCTCACCTCTAATTAGGGACGAATTGGAGAAGAAGGATG
GAGAAAATGTTTCGATGAAAGATCCTCCGGACTTATTGGACAGGCAGAAATGCCTGAACGCCTTGGCGTC
TCTTCGACATGCCAAATGGTTTCAGGCAAGGGCAAATGGATTAAAATCATGTGTAATTGTCCTCCGCATT
CTGCGTGATTTGTGCAACAGAGTCCCCACATGGGCACCATTGAAAGGATGGCCACTAGAACTTATATGTG
AAAAGTCTATAGGTACTTGTAATAGACCTTTGGGCGCTGGGGAGGCCTTGAGACGAGTAATGGAGTGTTT
GGCATCTGGAATACTACTTCCTGGGGGTCCTGGTCTTCATGATCCTTGTGAGCGAGACCCAACAGATGCT
CTGAGCTATATGACCATCCAGCAAAAAGAAGATATTACCCACAGTGCACAGCATGCACTCAGACTATCAG
CCTTTGGCCAGATTTACAAAGTGCTGGAGATGGACCCCCTTCCATCTAGTAAGCCTTTTCAGAAGTATTC
CTGGTCAGTTACTGATAAAGAAGGTGCTGGGTCTTCAGCTCTAAAGAGGCCATTTGAAGATGGATTAGGG
GATGATAAAGACCCCAACAAGAAGATGAAACGAAACTTAAGGAAAATTCTGGATAGTAAAGCAATAGACC
TTATGAATGCACTAATGAGGCTAAATCAGATCAGGCCTGGGCTTCAGTATAAGCTCCTATCTCAGTCTGG
CCCCGTTCATGCCCCAGTCTTCACAATGTCTGTAGATGTGGATGGCACAACATATGAAGCCTCAGGACCA
TCCAAGAAAACAGCAAAACTTCACGTAGCGGTGAAGGTATTGCAGGCAATGGGATATCCAACAGGCTTTG
ATGCAGATATTGAATGTATGAGTTCCGATGAAAAATCAGATAATGAAAGTAAAAATGAAACAGTGTCTTC
AAACTCAAGCAATAATACTGGAAATTCTACAACTGAAACCTCCAGTACCTTAGAGGTAAGAACTCAGGGC
CCTATCCTCACAGCAAGTGGCAAAAACCCTGTAATGGAGCTCAATGAAAAAAGAAGAGGTCTCAAGTATG
AACTCATCTCAGAGACTGGTGGAAGCCATGACAAGCGCTTTGTAATGGAGGTAGAAGTAGATGGACAGAA
ATTCAGAGGCGCAGGTCCAAATAAGAAAGTGGCAAAGGCGAGTGCAGCTTTAGCTGCCTTGGAGAAACTG
TTTTCTGGACCCAATGCGGCAAATAATAAGAAAAAGAAGATTATCCCTCAGGCAAAGGGCGTTGTGAATA
CAGCTGTGTCTGCAGCAGTCCAAGCTGTTCGGGGCAGAGGAAGAGGAACTCTAACAAGGGGAGCTTTTGT
TGGGGCGACAGCTGCTCCTGGCTACATAGCTCCAGGCTATGGAACACCATATGGTTACAGCACAGCTGCC
CCTGCCTATGGTTTACCCAAGAGAATGGTTCTGTTACCCGTTATGAAATTTCCAACATATCCTGTTCCCC
ACTACTCATTCTTTTAG

Translation (658 aa):
MVKHSTIYPSPEELEAVQNMVSTVECALKHVSDWLDETNKGTKTEGETEVKKDEAGENYSKDQGGRTLCG
VMRIGLVAKGLLIKDDMDLELVLMCKDKPTETLLNTVKDNLPIQIQKLTEEKYQVEQCVNEASIIIRNTK
EPTLTLKVILTSPLIRDELEKKDGENVSMKDPPDLLDRQKCLNALASLRHAKWFQARANGLKSCVIVLRI
LRDLCNRVPTWAPLKGWPLELICEKSIGTCNRPLGAGEALRRVMECLASGILLPGGPGLHDPCERDPTDA
LSYMTIQQKEDITHSAQHALRLSAFGQIYKVLEMDPLPSSKPFQKYSWSVTDKEGAGSSALKRPFEDGLG
DDKDPNKKMKRNLRKILDSKAIDLMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEASGP
SKKTAKLHVAVKVLQAMGYPTGFDADIECMSSDEKSDNESKNETVSSNSSNNTGNSTTETSSTLEVRTQG
PILTASGKNPVMELNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFRGAGPNKKVAKASAALAALEKL
FSGPNAANNKKKKIIPQAKGVVNTAVSAAVQAVRGRGRGTLTRGAFVGATAAPGYIAPGYGTPYGYSTAA
PAYGLPKRMVLLPVMKFPTYPVPHYSFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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