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Report for CCDS55341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55341.1 Public Homo sapiens 9 RABEPK 24 110 108 CCDS HistoryNCBI Gene:10244Re-query CCDS DB by CCDS ID:55341.1Re-query CCDS DB by GeneID:10244See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55341.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000259460.12 ENSP00000259460.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000259460.12Link to Ensembl Protein Viewer:ENSP00000259460.8Re-query CCDS DB by Nucleotide ID:ENST00000259460Re-query CCDS DB by Protein ID:ENSP00000259460
Original member Current member NCBI NM_001174153.2 NP_001167624.1 Accepted alive Link to Nucleotide Sequence:NM_001174153.2Link to Protein Sequence:NP_001167624.1Re-query CCDS DB by Nucleotide ID:NM_001174153Re-query CCDS DB by Protein ID:NP_001167624Link to BLAST:NP_001167624.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167624.1 321 Q7Z6M1-2 321 100% 0 0

Chromosomal Locations for CCDS 55341.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 125203014 125203066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125207564 125207721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125220539 125220700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125227910 125228059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125232596 125232745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 125233688 125233980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGAAGCAACTGCCAGTCTTGGAACCTGGAGACAAGCCCAGGAAAGCAACATGGTACACCTTGACTGTCC
CTGGAGACAGCCCCTGTGCTCGAGTTGGCCACAGCTGTTCATATTTACCCCCAGTTGGTAATGCCAAGAG
AGGGAAGGTCTTCATTGTTGGGGGAGCAAATCCAAACAGAAGCTTCTCAGACGTGCACACCATGGATCTG
GAAACCAGGACGTGGACCACGCCAGAAGTGACCAGCCCCCCACCATCCCCAAGAACATTCCACACATCAT
CGGCAGCCATTGGAAACCAGCTATATGTCTTTGGGGGCGGAGAGAGAGGTGCCCAGCCCGTGCAGGACAC
GAAGCTGCATGTGTTTGACGCAAACACTCTGACCTGGTCACAGCCAGAGACACTTGGAAATCCTCCATCT
CCCCGGCATGGTCATGTGATGGTGGCAGCAGGGACAAAGCTCTTCATCCACGGAGGCTTGGCGGGGGACA
GATTCTATGATGACCTCCACTGCATTGATATAAGTGACATGAAATGGCAGAAGCTAAATCCCACTGGGGC
TGCTCCAGCAGGCTGTGCTGCCCACTCAGCTGTGGCCATGGGAAAACATGTGTACATCTTTGGTGGAATG
ACTCCTGCAGGAGCACTGGACACAATGTACCAGTATCACACAGAAGAGCAGCATTGGACCTTGCTTAAAT
TTGATACTCTTCTACCCCCTGGACGATTGGACCATTCCATGTGTATCATTCCATGGCCAGTGACGTGTGC
TTCTGAGAAAGAAGATTCCAACTCTCTCACTCTGAACCATGAAGCTGAGAAAGAGGATTCAGCTGACAAA
GTAATGAGCCACAGTGGTGACTCACATGAGGAAAGCCAGACTGCTACACTGCTCTGTTTGGTGTTTGGTG
GGATGAATACAGAAGGGGAAATCTATGACGATTGTATTGTGACTGTAGTGGACTAA

Translation (321 aa):
MKQLPVLEPGDKPRKATWYTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFSDVHTMDL
ETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWSQPETLGNPPS
PRHGHVMVAAGTKLFIHGGLAGDRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGM
TPAGALDTMYQYHTEEQHWTLLKFDTLLPPGRLDHSMCIIPWPVTCASEKEDSNSLTLNHEAEKEDSADK
VMSHSGDSHEESQTATLLCLVFGGMNTEGEIYDDCIVTVVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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