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Report for CCDS55362.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55362.1 Public Homo sapiens XY ASMTL 24 110 108 CCDS HistoryNCBI Gene:8623Re-query CCDS DB by CCDS ID:55362.1Re-query CCDS DB by GeneID:8623See the combined annotation on chromosome X in Sequence ViewerSee the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55362.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000534940.6 ENSP00000446410.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534940.6Link to Ensembl Protein Viewer:ENSP00000446410.1Re-query CCDS DB by Nucleotide ID:ENST00000534940Re-query CCDS DB by Protein ID:ENSP00000446410
Original member Current member NCBI NM_001173473.2 NP_001166944.1 Accepted alive Link to Nucleotide Sequence:NM_001173473.2Link to Protein Sequence:NP_001166944.1Re-query CCDS DB by Nucleotide ID:NM_001173473Re-query CCDS DB by Protein ID:NP_001166944Link to BLAST:NP_001166944.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166944.1 563 O95671-3 563 100% 0 0

Chromosomal Locations for CCDS 55362.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11) On '-' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
X 1403269 1403489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1412732 1412854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1417973 1418116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1418982 1419114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1421658 1421842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1425525 1425687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1427734 1428121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1432269 1432377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1435022 1435083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1435694 1435758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1439097 1439144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1442186 1442236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

Chromosome Start Stop Links
Y 1403269 1403489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1412732 1412854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1417973 1418116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1418982 1419114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1421658 1421842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1425525 1425687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1427734 1428121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1432269 1432377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1435022 1435083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1435694 1435758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1439097 1439144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1442186 1442236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1692 nt):
ATGGAGACCGCCAAGCAGAAGGCCCTGGAGGTGGCCAACCGGCTGTACCAGAAAGACCTGCGGGCCCCCG
ACGTGGTCATTGGAGCGGACACGATCGTGACAGTCGGGGGGCTGATTCTGGAGAAGCCGGTGGACAAGCA
GGACGCCTACAGGATGCTGTCCCGGTTGAGTGGGAGAGAACACAGCGTGTTCACAGGTGTCGCGATCGTC
CACTGCTCCAGCAAAGACCATCAGCTGGACACCAGGGTCTCGGAATTCTACGAGGAAACGAAGGTGAAGT
TCTCGGAGCTGTCCGAGGAGCTGCTCTGGGAATACGTCCACAGCGGGGAGCCCATGGACAAAGCTGGCGG
CTACGGGATCCAGGCCCTGGGCGGCATGCTGGTGGAGTCCGTACACGGGGACTTTCTGAACGTGGTGGGA
TTCCCGCTGAACCACTTCTGCAAGCAGCTGGTGAAGCTCTACTACCCGCCCCGTCCGGAGGACCTGCGGC
GGAGTGTCAAGCACGACTCCATCCCGGCCGCGGACACCTTCGAAGACCTCAGTGACGTGGAGGGGGGCGG
CTCGGAGCCCACTCAGAGGGACGCGGGCAGCCGCGATGAGAAGGCCGAGGCGGGAGAGGCGGGACAGGCC
ACGGCAGAGGCTGAGTGTCACAGGACTCGGGAGACCCTGCCTCCGTTCCCGACACGCCTCCTGGAGCTGA
TTGAGGGCTTTATGCTATCCAAGGGCCTGCTCACCGCTTGCAAACTGAAGGTGTTCGATTTGTTAAAAGA
TGAAGCACCCCAGAAGGCTGCGGATATTGCCAGCAAAGTGGACGCCTCTGCGTGTGGAATGGAGAGGCTT
CTGGACATCTGTGCTGCCATGGGGCTCCTGGAGAAGACAGAGCAAGGTTACAGTAACACAGAGACAGCGA
ACGTCTACCTGGCATCGGATGGCGAATACTCTCTGCACGGCTTCATCATGCACAATAATGACCTCACATG
GAACCTCTTTACATACCTGGAGTTTGCCATCCGAGAGGGAACAAACCAGCACCACAGGGCGTTGGGGAAG
AAGGCGGAAGATCTGTTCCAGGATGCGTACTACCAGAGCCCGGAGACGCGGCTGAGGTTCATGCGGGCCA
TGCACGGCATGACGAAGCTGACTGCGTGCCAGGTGGCCACGGCCTTCAATCTGTCCCGCTTCTCCTCCGC
CTGCGACGTGGGAGGCTGCACGGGTGCACTGGCCCGAGAGCTGGCCCGTGAGTACCCTCGTATGCAGGTG
ACTGTGTTTGACCTCCCAGACATTATCGAGCTGGCCGCCCACTTCCAACCCCCCGGACCGCAGGCAGTGC
AGATCCACTTCGCAGCAGGTGACTTTTTCAGGGACCCCCTCCCCAGCGCTGAGCTGTACGTCCTGTGCCG
GATCCTGCATGACTGGCCAGACGACAAAGTCCACAAGTTACTCAGCAGGGTCGCCGAGAGCTGCAAGCCA
GGGGCCGGCCTGCTGCTGGTGGAGACGCTCCTGGATGAGGAGAAGAGGGTGGCGCAGCGCGCCCTGATGC
AGTCACTGAACATGCTGGTGCAGACTGAAGGCAAGGAGCGGAGCCTGGGCGAGTATCAGTGCTTGCTGGA
GCTGCACGGCTTCCACCAGGTGCAGGTGGTGCACTTGGGGGGTGTCCTGGATGCCATCTTGGCCACCAAA
GTGGCCCCCTGA

Translation (563 aa):
METAKQKALEVANRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHSVFTGVAIV
HCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSGEPMDKAGGYGIQALGGMLVESVHGDFLNVVG
FPLNHFCKQLVKLYYPPRPEDLRRSVKHDSIPAADTFEDLSDVEGGGSEPTQRDAGSRDEKAEAGEAGQA
TAEAECHRTRETLPPFPTRLLELIEGFMLSKGLLTACKLKVFDLLKDEAPQKAADIASKVDASACGMERL
LDICAAMGLLEKTEQGYSNTETANVYLASDGEYSLHGFIMHNNDLTWNLFTYLEFAIREGTNQHHRALGK
KAEDLFQDAYYQSPETRLRFMRAMHGMTKLTACQVATAFNLSRFSSACDVGGCTGALARELAREYPRMQV
TVFDLPDIIELAAHFQPPGPQAVQIHFAAGDFFRDPLPSAELYVLCRILHDWPDDKVHKLLSRVAESCKP
GAGLLLVETLLDEEKRVAQRALMQSLNMLVQTEGKERSLGEYQCLLELHGFHQVQVVHLGGVLDAILATK
VAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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