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Report for CCDS55497.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55497.1 Public Homo sapiens X PABIR2 24 110 108 CCDS HistoryNCBI Gene:159090Re-query CCDS DB by CCDS ID:55497.1Re-query CCDS DB by GeneID:159090See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55497.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370790.5 ENSP00000359826.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370790.5Link to Ensembl Protein Viewer:ENSP00000359826.1Re-query CCDS DB by Nucleotide ID:ENST00000370790Re-query CCDS DB by Protein ID:ENSP00000359826
Original member Current member NCBI NM_001166599.3 NP_001160071.1 Accepted alive Link to Nucleotide Sequence:NM_001166599.3Link to Protein Sequence:NP_001160071.1Re-query CCDS DB by Nucleotide ID:NM_001166599Re-query CCDS DB by Protein ID:NP_001160071Link to BLAST:NP_001160071.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001160071.1 247 Q7Z309-1 247 100% 0 0

Chromosomal Locations for CCDS 55497.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134772139 134772283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134781821 134781917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134785886 134785947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134787472 134787533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134788730 134788831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134789085 134789139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134789223 134789266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134793815 134793893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134796108 134796205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGGCTCAGGAGAAAATGGAGCTGGACCTTGAGCCTGACACATCTTATGGGGGAACCCTGAGGAGATCCA
GCAGCGCTCCCCTAATCCATGGGCTCAGTGACCTTTCACAGGTTTTCCAACCTTACACACTTAGAACTCG
GAGGAATAGTACAACAATTATGAGCCGTCACAGCCTGGAAGAAGGCCTGGATATGGTGAACAGAGAAACT
GCACATGAAAGGGAAATGCAAACGGCAATGCAGATAAGCCAATCATGGGATGAGAGCTTGAGCCTGAGTG
ACAGTGATTTTGACAAGCCGGAGAAATTATATTCTCCTAAGAGAATTGACTTCACTCCAGTTTCTCCAGC
ACCTTCACCCACCAGGGGATTCGGAAAGATGTTCGTGAGCAGCAGTGGATTGCCACCAAGTCCAGTTCCC
AGTCCAAGACGATTTTCAAGGAGAAGTCAGAGTCCAGTCAAGTGCATTAGACCCAGTGTTCTTGGTCCTC
TTAAAAGAAAAGGTGAAATGGAGACAGAAAGTCAGCCCAAGAGACTCTTCCAAGGCACTACCAATATGTT
ATCTCCAGATGCCGCGCAACTGTCTGATCTCAGTTCATGTTCAGATATTTTGGATGGCAGTAGTAGCAGC
AGTGGCTTATCCTCAGACCCGCTGGCTAAAGGCAGCGCTACCGCAGAGTCTCCAGTAGCATGCTCCAATT
CATGCTCTTCGTTCATCTTGATGGATGATCTCTCACCCAAGTGA

Translation (247 aa):
MAQEKMELDLEPDTSYGGTLRRSSSAPLIHGLSDLSQVFQPYTLRTRRNSTTIMSRHSLEEGLDMVNRET
AHEREMQTAMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKMFVSSSGLPPSPVP
SPRRFSRRSQSPVKCIRPSVLGPLKRKGEMETESQPKRLFQGTTNMLSPDAAQLSDLSSCSDILDGSSSS
SGLSSDPLAKGSATAESPVACSNSCSSFILMDDLSPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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