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Report for CCDS55501.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55501.1 Public Homo sapiens X PABIR3 24 110 108 CCDS HistoryNCBI Gene:159091Re-query CCDS DB by CCDS ID:55501.1Re-query CCDS DB by GeneID:159091See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55501.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370784.8 ENSP00000359820.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370784.8Link to Ensembl Protein Viewer:ENSP00000359820.4Re-query CCDS DB by Nucleotide ID:ENST00000370784Re-query CCDS DB by Protein ID:ENSP00000359820
Original member Current member NCBI NM_001170779.3 NP_001164250.1 Accepted alive Link to Nucleotide Sequence:NM_001170779.3Link to Protein Sequence:NP_001164250.1Re-query CCDS DB by Nucleotide ID:NM_001170779Re-query CCDS DB by Protein ID:NP_001164250Link to BLAST:NP_001164250.1
Original member Current member NCBI NM_001388440.1 NP_001375369.1 Accepted alive Link to Nucleotide Sequence:NM_001388440.1Link to Protein Sequence:NP_001375369.1Re-query CCDS DB by Nucleotide ID:NM_001388440Re-query CCDS DB by Protein ID:NP_001375369Link to BLAST:NP_001375369.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164250.1 195 Q6P4D5-1 195 100% 0 0
NP_001375369.1 195 Q6P4D5-1 195 100% 0 0

Chromosomal Locations for CCDS 55501.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134807599 134807708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134814771 134814849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134829226 134829282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134845205 134845248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134845347 134845401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134852800 134852896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134854091 134854236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (588 nt):
ATGGCACAGGAGAAAATGAAACTAGGTTTCAAGTCGCTGCCGAGTTCCACTACCGCAGACGGCAACATTC
TGAGAAGAGTCAACAGTGCCCCTTTGATCAATGGACTTGGTTTTAATTCACAGGTGTTGCAAGCTGACAT
GTTAAGAATTAGGACAAACAGAACAACATTTAGGAATCGACGCTCTCTGTTGTTGCCACCTCCTCCCTTT
CATGGTTCCATCAGCCGCCTTCATCAAATCAAACAGGAAGAAGCCATGGATTTAATAAATAGAGAAACAA
TGTCTGAATGGAAGCTACAAAGTGAGATACAGATAAGTCACTCTTGGGAAGAAGGCTTGAAACTGGTGAA
ATGGCATTTCAATATCAACCAAAAAAGATTTTCCAAGGCACAACCAACATGCTTTCTTCTGATACTTCCC
AACTGTCAGAAAATAATGTGTATCTACTTCCAGCTACTTTTGATGGAAACGACAGCAATGCTGGATCTTC
TGGTAATTCGTCAGCTGAAATCGGCACTGTCACAAACTCTCCTGTGTCACCTTCTGATACTGGTTCTCAT
TTGTTCTAGTAGACAAACTTTCAACTAA

Translation (195 aa):
MAQEKMKLGFKSLPSSTTADGNILRRVNSAPLINGLGFNSQVLQADMLRIRTNRTTFRNRRSLLLPPPPF
HGSISRLHQIKQEEAMDLINRETMSEWKLQSEIQISHSWEEGLKLVKWHFNINQKRFSKAQPTCFLLILP
NCQKIMCIYFQLLLMETTAMLDLLVIRQLKSALSQTLLCHLLILVLICSSRQTFN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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