NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55558.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55558.1 Public Homo sapiens 1 ANKRD65 24 110 108 CCDS HistoryNCBI Gene:441869Re-query CCDS DB by CCDS ID:55558.1Re-query CCDS DB by GeneID:441869See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55558.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000537107.6 ENSP00000445688.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000537107.6Link to Ensembl Protein Viewer:ENSP00000445688.1Re-query CCDS DB by Nucleotide ID:ENST00000537107Re-query CCDS DB by Protein ID:ENSP00000445688
Original member Current member EBI ENST00000454272.2 ENSP00000482314.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000454272.2Link to Ensembl Protein Viewer:ENSP00000482314.1Re-query CCDS DB by Nucleotide ID:ENST00000454272Re-query CCDS DB by Protein ID:ENSP00000482314
Original member Current member NCBI NM_001145210.3 NP_001138682.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145210.3Link to Protein Sequence:NP_001138682.1Re-query CCDS DB by Nucleotide ID:NM_001145210Re-query CCDS DB by Protein ID:NP_001138682Link to BLAST:NP_001138682.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138682.1 399 E5RJM6-1 399 100% 0 0

Chromosomal Locations for CCDS 55558.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 1419100 1419549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1420052 1420592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1420797 1421005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGGACTCCCAGAGGCCTGAGCCCAGAGAGGAGGAGGAGGAGGAACAGGAACTGCGGTGGATGGAGCTGG
ACTCCGAAGAGGCCCTGGGAACCAGGACAGAGGGGCCTAGTGTTGTCCAGGGCTGGGGGCACCTGCTCCA
GGCCGTGTGGAGGGGCCCTGCAGGCCTGGTGACGCAGCTGCTGCGGCAAGGTGCCAGCGTGGAGGAGAGG
GACCACGCAGGCCGGACCCCGCTCCACCTGGCCGTGCTGCGGGGCCACGCGCCCCTGGTGCGTCTCCTGC
TGCAGCGAGGGGCCCCGGTGGGCGCGGTGGACCGGGCGGGGCGCACCGCGCTGCACGAGGCCGCCTGGCA
CGGACACTCGCGGGTGGCCGAGCTGCTGCTGCAGCGCGGGGCCTCGGCGGCGGCTCGCTCCGGGACGGGC
CTCACGCCGCTGCACTGGGCCGCTGCCCTGGGCCACACGCTGCTGGCCGCGCGCCTGCTGGAGGCTCCGG
GCCCGGGACCCGCGGCAGCGGAGGCGGAGGACGCGCGCGGCTGGACGGCGGCGCACTGGGCGGCCGCGGG
CGGGCGGCTGGCGGTGCTGGAGCTGCTGGCGGCCGGCGGCGCGGGCCTGGACGGCGCCCTGCTCGTGGCT
GCCGCTGCGGGGCGCGGGGCGGCGCTGCGCTTCCTCCTGGCGCGCGGGGCGCGGGTGGACGCCCGGGATG
GCGCGGGGGCCACAGCGCTGGGTCTGGCGGCCGCCCTAGGCCGCTCCCAGGACATTGAGGTGCTGCTGGG
CCACGGGGCAGACCCAGGCATCAGGGACAGGCATGGCCGCTCTGCGCTGCACAGGGCTGCCGCCCGAGGA
CACCTGCTTGCCGTCCAGTTGCTGGTCACCCAGGGGGCCGAGGTGGATGCGCGGGACACCCTGGGCCTCA
CACCCCTGCATCACGCCTCTCGGGAAGGCCACGTGGAGGTTGCCGGCTGCCTGCTGGACAGGGGTGCCCA
GGTGGATGCTACCGGCTGGCTCCGAAAGACCCCCCTACACCTGGCTGCAGAGCGAGGGCATGGGCCTACC
GTGGGGCTTCTGCTGAGCCGAGGGGCCAGCCCCACTCTGCGGACGCAGTGGGCCGAGGTGGCCCAGATGC
CTGAGGGGGACCTGCCCCAGGCGCTGCCTGAACTTGGAGGGGGGGAGAAGGAGTGTGAGGGCATAGAGTC
CACGGGCTGA

Translation (399 aa):
MDSQRPEPREEEEEEQELRWMELDSEEALGTRTEGPSVVQGWGHLLQAVWRGPAGLVTQLLRQGASVEER
DHAGRTPLHLAVLRGHAPLVRLLLQRGAPVGAVDRAGRTALHEAAWHGHSRVAELLLQRGASAAARSGTG
LTPLHWAAALGHTLLAARLLEAPGPGPAAAEAEDARGWTAAHWAAAGGRLAVLELLAAGGAGLDGALLVA
AAAGRGAALRFLLARGARVDARDGAGATALGLAAALGRSQDIEVLLGHGADPGIRDRHGRSALHRAAARG
HLLAVQLLVTQGAEVDARDTLGLTPLHHASREGHVEVAGCLLDRGAQVDATGWLRKTPLHLAAERGHGPT
VGLLLSRGASPTLRTQWAEVAQMPEGDLPQALPELGGGEKECEGIESTG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH