NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55573.1 Public Homo sapiens 1 THAP3 24 110 108 CCDS HistoryNCBI Gene:90326Re-query CCDS DB by CCDS ID:55573.1Re-query CCDS DB by GeneID:90326See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55573.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307896.10 ENSP00000311537.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000307896.10Link to Ensembl Protein Viewer:ENSP00000311537.6Re-query CCDS DB by Nucleotide ID:ENST00000307896Re-query CCDS DB by Protein ID:ENSP00000311537
Original member Current member NCBI NM_001195752.2 NP_001182681.1 Accepted alive Link to Nucleotide Sequence:NM_001195752.2Link to Protein Sequence:NP_001182681.1Re-query CCDS DB by Nucleotide ID:NM_001195752Re-query CCDS DB by Protein ID:NP_001182681Link to BLAST:NP_001182681.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182681.1 238 Q8WTV1-3 238 100% 0 0

Chromosomal Locations for CCDS 55573.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 6625219 6625292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6628499 6628691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6630291 6630353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6632391 6632495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6632796 6633077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGCCGAAGTCGTGCGCGGCCCGGCAGTGCTGCAACCGCTACAGCAGCCGCAGGAAGCAGCTCACCTTCC
ACCGGTTTCCGTTCAGCCGCCCGGAGCTGCTGAAGGAATGGGTGCTGAACATCGGCCGGGGCAACTTCAA
GCCCAAGCAGCACACGGTCATCTGCTCCGAGCACTTCCGGCCAGAGTGCTTCAGCGCCTTTGGAAACCGC
AAGAACCTAAAGCACAATGCCGTGCCCACGGTGTTCGCCTTTCAGGACCCCACACAGGTGAGGGAGAACA
CAGACCCTGCCAGTGAGAGAGGAAATGCCAGCTCTTCTCAGAAAGAAAAGGTCCTCCCTGAGGCGGGGGC
CGGAGAGGACAGTCCTGGGAGAAACATGGACACTGCACTTGAAGAGCTTCAGTTGCCCCCAAATGCCGAA
GGCCACGTAAAACAGGTCTCGCCACGGAGGCCGCAAGCAACAGAGGCTGTTGGCCGGCCGACTGGCCCTG
CAGGCCTGAGAAGGACCCCCAACAAGCAGCCATCTGATCACAGCTATGCCCTTTTGGACTTAGATTCCCT
GAAGAAAAAACTCTTCCTCACTCTGAAGGAAAATGAAAAGCTCCGGAAGCGCTTGCAGGCCCAGAGGCTG
GTGATGCGAAGGATGTCCAGCCGCCTCCGTGCTTGCAAAGGGCACCAGGGACTCCAGGCCAGACTTGGGC
CAGAGCAGCAGAGCTGA

Translation (238 aa):
MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGNFKPKQHTVICSEHFRPECFSAFGNR
KNLKHNAVPTVFAFQDPTQVRENTDPASERGNASSSQKEKVLPEAGAGEDSPGRNMDTALEELQLPPNAE
GHVKQVSPRRPQATEAVGRPTGPAGLRRTPNKQPSDHSYALLDLDSLKKKLFLTLKENEKLRKRLQAQRL
VMRRMSSRLRACKGHQGLQARLGPEQQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH