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Report for CCDS55600.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55600.1 Public Homo sapiens 1 ECHDC2 24 110 108 CCDS HistoryNCBI Gene:55268Re-query CCDS DB by CCDS ID:55600.1Re-query CCDS DB by GeneID:55268See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55600.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371522.9 ENSP00000360577.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371522.9Link to Ensembl Protein Viewer:ENSP00000360577.4Re-query CCDS DB by Nucleotide ID:ENST00000371522Re-query CCDS DB by Protein ID:ENSP00000360577
Original member Current member NCBI NM_001198961.2 NP_001185890.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001198961.2Link to Protein Sequence:NP_001185890.1Re-query CCDS DB by Nucleotide ID:NM_001198961Re-query CCDS DB by Protein ID:NP_001185890Link to BLAST:NP_001185890.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185890.1 292 Q86YB7-1 292 100% 0 0

Chromosomal Locations for CCDS 55600.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 52896520 52896597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52897437 52897484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52899174 52899224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52904646 52904833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52905034 52905090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52906519 52906611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52907868 52907954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52911566 52911653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52911723 52911790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52921553 52921673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGCTGCGCGTTCTGTGCCTCCTGCGCCCCTGGAGGCCCCTTCGGGCCCGCGGCTGCGCTTCCGACGGGG
CGGCCGGGGGCTCAGAGATCCAAGTGCGCGCCCTGGCGGGTCCGGACCAAGGGATCACTGAGATTCTGAT
GAACAGACCTTCTGCCCGCAATGCCTTGGGGAATGTCTTCGTCAGTGAGCTGCTGGAAACTCTGGCCCAG
CTGCGGGAGGACCGGCAAGTGCGTGTCCTGCTCTTCAGAAGTGGAGTGAAGGGCGTGTTCTGTGCAGGTG
CAGACCTGAAGGAGCGGGAACAGATGAGTGAAGCAGAGGTGGGGGTGTTTGTCCAGCGACTCCGGGGCCT
GATGAATGACATCGCAGCCTTCCCTGCACCCACCATTGCGGCTATGGATGGGTTTGCCTTGGGCGGAGGC
CTAGAGCTTGCCCTGGCCTGTGACCTCCGAGTGGCAGCTTCCTCGGCAGTCATGGGACTGATTGAGACCA
CGCGAGGGCTCCTCCCGGGGGCAGGAGGGACTCAGAGGCTGCCCCGTTGTCTGGGGGTGGCCCTGGCGAA
GGAGCTCATCTTCACGGGCCGACGACTGAGTGGAACTGAGGCCCACGTACTGGGGCTGGTGAATCACGCT
GTGGCCCAGAACGAGGAGGGGGACGCCGCCTACCAGCGGGCACGAGCACTGGCCCAGGAGATCCTGCCCC
AGGCCCCCATTGCCGTGCGGCTGGGCAAAGTAGCCATTGACCGAGGAACGGAGGTGGACATTGCATCTGG
GATGGCCATTGAAGGGATGTGCTATGCCCAGAATATTCCAACCCGGGACCGGCTAGAGGGCATGGCAGCC
TTCAGGGAGAAGCGGACTCCCAAATTTGTTGGCAAATGA

Translation (292 aa):
MLRVLCLLRPWRPLRARGCASDGAAGGSEIQVRALAGPDQGITEILMNRPSARNALGNVFVSELLETLAQ
LREDRQVRVLLFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLRGLMNDIAAFPAPTIAAMDGFALGGG
LELALACDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGTEAHVLGLVNHA
VAQNEEGDAAYQRARALAQEILPQAPIAVRLGKVAIDRGTEVDIASGMAIEGMCYAQNIPTRDRLEGMAA
FREKRTPKFVGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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