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Report for CCDS55680.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55680.1 Public Homo sapiens 1 EIF2D 24 110 108 CCDS HistoryNCBI Gene:1939Re-query CCDS DB by CCDS ID:55680.1Re-query CCDS DB by GeneID:1939See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55680.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367114.7 ENSP00000356081.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367114.7Link to Ensembl Protein Viewer:ENSP00000356081.3Re-query CCDS DB by Nucleotide ID:ENST00000367114Re-query CCDS DB by Protein ID:ENSP00000356081
Original member Current member NCBI NM_001201478.2 NP_001188407.1 Accepted alive Link to Nucleotide Sequence:NM_001201478.2Link to Protein Sequence:NP_001188407.1Re-query CCDS DB by Nucleotide ID:NM_001201478Re-query CCDS DB by Protein ID:NP_001188407Link to BLAST:NP_001188407.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001188407.1 460 P41214-2 460 100% 0 0

Chromosomal Locations for CCDS 55680.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 206591775 206591845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206593619 206593793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206595718 206595838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206597100 206597195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206599003 206599092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206599463 206599612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206599733 206599836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206600263 206600308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206605400 206605507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206608236 206608326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206609376 206609459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206611184 206611374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206612287 206612342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGTTTGCCAAGGCCTTTCGGGTCAAGTCCAACACGGCCATCAAGGGGTCGGACAGGAGAAAGCTTCGAG
CTGATGTGACAACTGCTTTCCCCACCCTTGGAACTGATCAAGTCTCTGAGTTAGTACCTGGAAAGGAGGA
GCTCAACATTGTGAAGTTGTATGCTCACAAAGGGGATGCAGTGACTGTGTACGTGAGTGGTGGTAACCCC
ATCCTCTTTGAACTGGAGAAAAATCTGTATCCAACAGTGTACACGCTGTGGTCCTATCCTGATCTTCTGC
CAACCTTTACAACATGGCCTCTGGTGCTCGAGAAACTGGTAGGGGGAGCAGATTTGATGCTGCCTGGACT
GGTGATGCCCCCTGCTGGTCTGCCTCAGGTACAGAAGGGCGACCTCTGTGCCATTTCTTTGGTGGGGAAC
AGAGCCCCTGTAGCCATTGGAGTTGCAGCCATGTCCACAGCTGAGATGCTCACGTCAGGCCTGAAGGGAA
GGGGCTTCTCTGTGCTCCACACTTACCAGGACCACTTGTGCCCCGAAGGACGACAACTGGACATAAAGAA
GTCAAGCTACAAAAAGCTCTCTAAGTTCCTGCAGCAAATGCAGCAGGAGCAGATTATACAGGTGAAGGAG
CTGAGCAAAGGGGTGGAGAGCATTGTGGCTGTGGACTGGAAACACCCGAGGATTACATCTTTCGTCATAC
CCGAGCCCTCCCCGACCTCCCAGACTATCCAGGAGGGTAGCAGGGAACAGCCCTATCACCCTCCAGATAT
AAAACCCCTCTACTGTGTCCCAGCCAGCATGACCCTGCTCTTCCAGGAGTCTGGCCACAAGAAGGGGAGC
TTTCTGGAGGGCAGTGAGGTCCGAACGATCGTCATTAACTACGCCAAGAAAAATGACCTGGTTGATGCAG
ACAACAAAAATCTTGTGAGATTGGATCCCATCCTATGTGACTGCATCTTAGAGAAAAATGAACAGCATAC
AGTCATGAAGCTTCCATGGGACAGTCTTCTGACCAGGTGTTTGGAAAAATTACAGCCTGCCTATCAAGTG
ACCCTTCCCGGACAAGAGCCCATTGTGAAGAAAGGGAGAATCTGTCCAATTGACATCACCCTAGCACAAA
GAGCGTCTAATAAAAAGGTGACCGTGGTCCGGAACTTGGAGGCCTATGGTCTGGACCCATACTCAGTGGC
TGCCATCCTTCAGCAGCGATGCCAGGCTAGCACCACCGTCAATCCTGCCCCTGGGGCCAAGGACAGCCTT
CAGGTGCAGATCCAGGGAAACCAGGTCCACCACCTCGGCTGGCTATTGCTTGAAGAGTATCAGCTCCCTC
GAAAACACATCCAAGGTCTAGAAAAGGCCCTCAAACCTGGCAAGAAGAAGTGA

Translation (460 aa):
MFAKAFRVKSNTAIKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAHKGDAVTVYVSGGNP
ILFELEKNLYPTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLPGLVMPPAGLPQVQKGDLCAISLVGN
RAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLCPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKE
LSKGVESIVAVDWKHPRITSFVIPEPSPTSQTIQEGSREQPYHPPDIKPLYCVPASMTLLFQESGHKKGS
FLEGSEVRTIVINYAKKNDLVDADNKNLVRLDPILCDCILEKNEQHTVMKLPWDSLLTRCLEKLQPAYQV
TLPGQEPIVKKGRICPIDITLAQRASNKKVTVVRNLEAYGLDPYSVAAILQQRCQASTTVNPAPGAKDSL
QVQIQGNQVHHLGWLLLEEYQLPRKHIQGLEKALKPGKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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