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Report for CCDS55690.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55690.1 Public Homo sapiens 1 COA6 24 110 108 CCDS HistoryNCBI Gene:388753Re-query CCDS DB by CCDS ID:55690.1Re-query CCDS DB by GeneID:388753See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55690.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366612.1 ENSP00000355571.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366612.1Link to Ensembl Protein Viewer:ENSP00000355571.1Re-query CCDS DB by Nucleotide ID:ENST00000366612Re-query CCDS DB by Protein ID:ENSP00000355571
Original member Current member EBI ENST00000619305.1 ENSP00000479686.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619305.1Link to Ensembl Protein Viewer:ENSP00000479686.1Re-query CCDS DB by Nucleotide ID:ENST00000619305Re-query CCDS DB by Protein ID:ENSP00000479686
Original member Current member NCBI NM_001301733.1 NP_001288662.1 Accepted alive Link to Nucleotide Sequence:NM_001301733.1Link to Protein Sequence:NP_001288662.1Re-query CCDS DB by Nucleotide ID:NM_001301733Re-query CCDS DB by Protein ID:NP_001288662Link to BLAST:NP_001288662.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288662.1 79 Q5JTJ3-3 79 100% 0 0

Chromosomal Locations for CCDS 55690.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 234374246 234374389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 234383723 234383818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (240 nt):
ATGGCAGCCCCATCTATGAAGGAAAGACAGGTCTGCTGGGGGGCCCGGGATGAGTACTGGAAGTGTTTAG
ATGAGAACTTAGAGGATGCTTCTCAATGCAAGAAGTTAAGAAGCTCTTTCGAATCAAGTTGTCCCCAACA
GTGGATAAAATATTTTGATAAAAGAAGAGACTACTTAAAATTCAAAGAAAAATTTGAAGCAGGACAATTT
GAGCCTTCAGAAACAACTGCAAAATCCTAG

Translation (79 aa):
MAAPSMKERQVCWGARDEYWKCLDENLEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQF
EPSETTAKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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