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Report for CCDS55760.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
55760.1 |
Public |
Homo sapiens |
11 |
ATG13 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:9776](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:55760.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:9776](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 11 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 55760.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000528494.5 |
ENSP00000432412.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000528494.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000432412.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000528494](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000432412](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000683050.1 |
ENSP00000507809.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000683050.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000507809.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000683050](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000507809](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001205119.2 |
NP_001192048.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001205119.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001192048.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001205119](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001192048](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001192048.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346311.2 |
NP_001333240.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346311.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333240.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346311](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333240](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333240.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346312.2 |
NP_001333241.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346312.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333241.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346312](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333241](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333241.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346313.2 |
NP_001333242.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346313.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333242.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346313](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333242](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333242.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346314.2 |
NP_001333243.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346314.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333243.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346314](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333243](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333243.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346315.2 |
NP_001333244.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346315.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333244.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346315](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333244](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333244.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346316.2 |
NP_001333245.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346316.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333245.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346316](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333245](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333245.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 55760.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1653 nt): ATGGAAACTGATCTCAATTCCCAGGACAGAAAGGACCTGGACAAGTTTATTAAATTTTTTGCCCTCAAGA CTGTCCAAGTGATTGTCCAGGCTCGGCTTGGTGAAAAGATTTGCACTCGTTCATCATCTTCTCCAACGGG TTCAGATTGGTTCAACTTAGCAATCAAAGACATCCCAGAGGTTACACATGAAGCAAAGAAGGCACTGGCA GGACAGCTGCCTGCAGTCGGGAGGTCCATGTGTGTGGAGATTTCACTTAAGACTTCTGAGGGAGATTCCA TGGAGCTGGAAATATGGTGTCTTGAAATGAATGAAAAGTGTGATAAAGAAATCAAAGTTTCCTACACGGT GTACAACAGACTGTCATTGCTGCTGAAGTCCCTTCTTGCTATAACTAGGGTGACACCAGCCTATAGGCTC TCCAGGAAACAAGGGCATGAATATGTCATATTATACAGGATATATTTTGGAGAAGTTCAGCTGAGTGGCT TAGGAGAAGGCTTCCAGACAGTTCGTGTTGGGACAGTGGGCACCCCTGTGGGCACCATCACTCTTTCTTG TGCTTACAGAATTAACTTGGCATTCATGTCTACCAGGCAATTTGAGAGGACCCCACCTATCATGGGGATT ATTATTGATCACTTTGTGGACCGTCCCTATCCCAGCTCCTCTCCCATGCACCCCTGCAATTACAGAACTG CTGGTGAGGACACTGGAGTAATATACCCGTCTGTAGAAGACTCTCAAGAAGTGTGTACCACCTCTTTTTC CACCTCCCCACCATCCCAGTGTGTGTTTACTGTCACAAAGGCACATTTTCAGACCCCTACTCCTGTGGTG ACGGACACCCTGAGGGTCCCCATGGCAGGACTGGCCTTTTCCCATCAACTCTCAAGCTCTCGCCTTTCCT ATCAGCCTGCTGCCCTGGGCGTTGGATCAGCTGACCTGGCTTATCCAGTAGTGTTTGCTGCTGGCTTAAA TGCTACACACCCTCACCAGCTGATGGTTCCTGGGAAGGAAGGTGGGGTACCCCTTGCTCCCAACCAGCCT GTCCATGGTACCCAGGCTGACCAGGAGAGACTGGCAACCTGCACCCCTTCTGACAGAACCCACTGTGCTG CCACACCCTCCAGTAGTGAGGATACTGAAACCGTATCAAACAGCAGTGAGGGACGGGCCTCCCCTCACGA TGTCTTGGAGACCATCTTTGTCCGAAAAGTGGGGGCTTTTGTCAACAAACCCATTAACCAGGTGACCCTG ACGAGTTTGGATATACCCTTTGCCATGTTTGCTCCCAAGAATTTGGAGCTGGAGGATACCGATCCAATGG TGAATCCTCCAGATTCCCCAGAGACTGAATCTCCTCTCCAGGGCAGCCTGCACTCAGATGGCTCCAGCGG GGGCAGCAGTGGCAATACCCATGATGACTTTGTTATGATAGACTTTAAACCAGCTTTTTCTAAAGATGAC ATTCTTCCGATGGACCTGGGGACCTTCTATCGGGAGTTTCAGAACCCACCTCAGCTGAGCAGCCTCTCCA TAGATATTGGAGCACAGTCCATGGCTGAAGACTTGGACTCATTACCAGAGAAGCTGGCTGTGCATGAGAA GAATGTCCGCGAGTTTGATGCCTTTGTGGAAACCCTGCAGTAA
Translation (550 aa): METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPEVTHEAKKALA GQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNRLSLLLKSLLAITRVTPAYRL SRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPVGTITLSCAYRINLAFMSTRQFERTPPIMGI IIDHFVDRPYPSSSPMHPCNYRTAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQCVFTVTKAHFQTPTPVV TDTLRVPMAGLAFSHQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQLMVPGKEGGVPLAPNQP VHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTL TSLDIPFAMFAPKNLELEDTDPMVNPPDSPETESPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDD ILPMDLGTFYREFQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
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