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Report for CCDS55897.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55897.1 Public Homo sapiens 13 CCDC169 24 110 108 CCDS HistoryNCBI Gene:728591Re-query CCDS DB by CCDS ID:55897.1Re-query CCDS DB by GeneID:728591See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55897.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000503173.5 ENSP00000426174.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503173.5Link to Ensembl Protein Viewer:ENSP00000426174.1Re-query CCDS DB by Nucleotide ID:ENST00000503173Re-query CCDS DB by Protein ID:ENSP00000426174
Original member Current member NCBI NM_001198908.2 NP_001185837.1 Accepted alive Link to Nucleotide Sequence:NM_001198908.2Link to Protein Sequence:NP_001185837.1Re-query CCDS DB by Nucleotide ID:NM_001198908Re-query CCDS DB by Protein ID:NP_001185837Link to BLAST:NP_001185837.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185837.1 241 A6NNP5-4 241 100% 0 0

Chromosomal Locations for CCDS 55897.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 36227201 36227381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36248606 36248682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36253803 36253856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36254045 36254143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36283469 36283509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36283592 36283702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36295778 36295857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36297637 36297719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGAAGGAAGAGAGAAACTACAACTTCGACGGTGTGAGCACCAACCGCCTGAAACAGCAGTTGCTGGAAG
AAGTCCGCAAGAAGGATGCAGTGCAACTCTCAATATTTGAACTAAGACACAAGATTACGGAACTGGAAGC
CAAACTCAATACTGACAATGAAGGTAGTGAATGGAAAACCCGTTATGAGACACAACTTGAATTAAATGAT
GAACTAGAAAAGCAAATTGTTTATCTCAAGGAGAAAGTGGAAAAAATCCATGGAAACTCTTCAGATAGAC
TATCTTCTATTCGTGTCTATGAACGAATGCCAGTGGAATCCTTAAACACATTACTTAAACAGCTAGAAGA
AGAAAAGAAGACTCTTGAAAGTCAAGTGAAATACTATGCACTTAAACTGGAACAAGAATCAAAGGCTTAC
CAGAAGATCAACAATGAACGCCGTACATACCTAGCTGAAATGTCTCAGGGTTCTGGTTTACATCAAGTTT
CTAAAAGGCAACAGGTGGATCAACTGCCTAGGATGCAAGAGAATCTAGTGAAAACCCTCCTCTTAAAAGA
AGAATTGGACCCTTTAAAGGTCAGCTGCTTGGAGACATTGGGTTTCAGTGCTGCAGGTGTGGCTGGACCA
GAGAATAGGACATGCCTCGGACAAAAAGCACTCTGGCCCGCCTGCTTACATGGGTCCTCAACCTTGGCTG
TGTGTCAGACTCACCTGAAGAGCTAA

Translation (241 aa):
MKEERNYNFDGVSTNRLKQQLLEEVRKKDAVQLSIFELRHKITELEAKLNTDNEGSEWKTRYETQLELND
ELEKQIVYLKEKVEKIHGNSSDRLSSIRVYERMPVESLNTLLKQLEEEKKTLESQVKYYALKLEQESKAY
QKINNERRTYLAEMSQGSGLHQVSKRQQVDQLPRMQENLVKTLLLKEELDPLKVSCLETLGFSAAGVAGP
ENRTCLGQKALWPACLHGSSTLAVCQTHLKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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