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Report for CCDS56046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56046.1 Public Homo sapiens 17 TMEM235 24 110 108 CCDS HistoryNCBI Gene:283999Re-query CCDS DB by CCDS ID:56046.1Re-query CCDS DB by GeneID:283999See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56046.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000421688.7 ENSP00000402790.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000421688.7Link to Ensembl Protein Viewer:ENSP00000402790.2Re-query CCDS DB by Nucleotide ID:ENST00000421688Re-query CCDS DB by Protein ID:ENSP00000402790
Original member Current member NCBI NM_001204210.2 NP_001191139.1 Accepted alive Link to Nucleotide Sequence:NM_001204210.2Link to Protein Sequence:NP_001191139.1Re-query CCDS DB by Nucleotide ID:NM_001204210Re-query CCDS DB by Protein ID:NP_001191139Link to BLAST:NP_001191139.1
Original member Current member NCBI NM_001395503.1 NP_001382432.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001395503.1Link to Protein Sequence:NP_001382432.1Re-query CCDS DB by Nucleotide ID:NM_001395503Re-query CCDS DB by Protein ID:NP_001382432Link to BLAST:NP_001382432.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191139.1 223 A6NFC5-1 223 100% 0 0
NP_001382432.1 223 A6NFC5-1 223 100% 0 0

Chromosomal Locations for CCDS 56046.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 78232024 78232213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78233895 78233975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78234593 78234730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78239024 78239273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78239780 78239792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGGCCCGGCTGGGCGCGCTGCTCCTGGCCGCCGCCCTGGGTGCACTGCTCAGCTTCGCGCTCCTGGCCG
CCGCGGTCGCCAGCGACTACTGGTACATCCTGGAGGTGGCGGACGCCGGCAATGGCAGCGCCTGGCCCGG
GCGCGCAGAGCTGCTCTCCTCGCACTCGGGGCTCTGGCGCATCTGCGAAGGGCAGAACGGCTGCATCCCG
CTGGTCGACCCTTTTGCCAGTGAGAGCCTGGACGTCTCCACCTCGGTGCAGCACCTCATCTTGCTGCACC
GTGCAGTCATTGTGGTCCTGCCCCTGAGCCTGGTCCTTCTCGTGTGTGGCTGGATCTGCGGCCTGCTCAG
CTCCCTGGCCCAGAGCGTGTCTCTGCTGCTTTTCACCGGCTGCTACTTCCTGCTGGGGAGTGTCCTGACA
CTGGCGGGGGTCAGCATCTACATCAGCTACTCGCACCTGGCCTTTGCGGAGACGGTGCAGCAGTATGGCC
CGCAGCACATGCAGGGCGTCCGCGTCAGCTTCGGCTGGTCCATGGCCCTGGCCTGGGGCTCCTGTGCCTT
GGAGGCATTCAGCGGAACCCTCCTGCTCTCAGCTGCCTGGACCCTCAGCCTGAGCCCCCCAATCTGTGGT
CATCTGAGTCCCCAGCAGGTGGGAGGGAGAGGGGGAGACTGA

Translation (223 aa):
MARLGALLLAAALGALLSFALLAAAVASDYWYILEVADAGNGSAWPGRAELLSSHSGLWRICEGQNGCIP
LVDPFASESLDVSTSVQHLILLHRAVIVVLPLSLVLLVCGWICGLLSSLAQSVSLLLFTGCYFLLGSVLT
LAGVSIYISYSHLAFAETVQQYGPQHMQGVRVSFGWSMALAWGSCALEAFSGTLLLSAAWTLSLSPPICG
HLSPQQVGGRGGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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