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Report for CCDS56050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56050.1 Public Homo sapiens 18 DLGAP1 24 110 108 CCDS HistoryNCBI Gene:9229Re-query CCDS DB by CCDS ID:56050.1Re-query CCDS DB by GeneID:9229See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56050.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539435.5 ENSP00000446312.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539435.5Link to Ensembl Protein Viewer:ENSP00000446312.1Re-query CCDS DB by Nucleotide ID:ENST00000539435Re-query CCDS DB by Protein ID:ENSP00000446312
Original member Current member NCBI NM_001242766.2 NP_001229695.1 Accepted alive Link to Nucleotide Sequence:NM_001242766.2Link to Protein Sequence:NP_001229695.1Re-query CCDS DB by Nucleotide ID:NM_001242766Re-query CCDS DB by Protein ID:NP_001229695Link to BLAST:NP_001229695.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229695.1 685 O14490-6 685 100% 0 0

Chromosomal Locations for CCDS 56050.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 3499185 3499394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3502493 3502645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3508570 3508661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3534194 3534615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3567490 3567581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3581875 3582248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3656084 3656113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3729135 3729375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3742335 3742512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3814059 3814273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3845232 3845282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2058 nt):
ATGAACTTAATTTTCCATAAAGACATTCTGTTTGGCATTCCAGCTAATAAGGTTCCACAAGATGAATGGA
CAGGGTACACCCCACGAGGTAAAGATGATGAAATTCCATGCCGAAGAATGCGGAGTGGCAGTTATATCAA
GGCCATGGGGGATGAAGACAGTGGAGACTCAGACACGAGTCCTAAGCCTTCTCCAAAAGTTGCTGCGCGG
AGAGAAAGCTATCTCAAGGCTACTCAGCCATCCCTTACAGAACTCACCACACTCAAAATCTCCAATGAAC
ACTCACCCAAACTCCAGATCCGGAGTCATAGTTACCTGAGGGCAGTGAGTGAAGTCTCCATCAACCGGAG
CCTGGACAGCCTGGACCCTGCAGGCTTGCTCACATCACCAAAGTTCCGCTCCAGGAATGAGAGCTACATG
CGAGCCATGAGCACCATCAGCCAGGTGAGCGAGATGGAAGTGAACGGGCAGTTCGAGTCCGTGTGCGAGT
CCGTGTTCAGCGAGCTGGAGTCGCAGGCCGTGGAAGCGCTGGACCTGCCCATGCCCGGCTGCTTCCGCAT
GCGGAGCCACAGCTATGTGCGGGCCATTGAGAAAGGCTGCTCCCAGGACGACGAGTGCGTGTCCCTGAGG
TCGTCCTCGCCGCCGCGCACCACCACCACCGTTAGGACCATCCAGAGCAGCACGGGTGTCATAAAACTGA
GTTCTGCAGTTGAAGTGTCATCTTGCATTACAACATATAAGAAGACACCACCTCCAGTCCCACCCAGAAC
TACCACGAAACCTTTCATTTCTATCACAGCCCAGAGTAGCACAGAGTCAGCCCAGGATGCCTACATGGAC
GGACAGGGCCAGCGAGGAGATATTATCAGCCAGTCTGGACTCAGCAACTCCACCGAGAGCCTGGACAGTA
TGAAGGCTCTGACAGCCGCCATCGAAGCTGCAAACGCCCAGATCCATGGCCCTGCCAGTCAACACATGGG
CAATAACACTGCCACCGTCACCACCACGACTACCATAGCCACCGTCACCACGGAGGACAGGAAGAAGGAC
CACTTTAAGAAAAATCGATGCCTGTCTATCGGGATACAGGTGGATGATGCTGAAGAACCTGACAAAACAG
GGGAGAATAAAGCACCCAGTAAGTTCCAGTCCGTGGGAGTGCAAGTAGAAGAAGAGAAGTGCTTCCGCAG
GTTCACTCGATCCAACAGTGTGACGACAGCAGTACAGGCCGACCTGGACTTCCATGATAATCTGGAAAAT
TCTCTGGAATCTATAGAGGACAATTCGTGTCCTGGCCCCATGGCCAGACAGTTCTCCCGCGATGCCAGCA
CCTCCACAGTCAGCATTCAGGGCTCAGGAAACCATTACCATGCCTGTGCCGCCGATGATGACTTTGACAC
GGATTTTGACCCCTCTATTCTGCCTCCTCCGGACCCCTGGATTGACTCTATCACTGAAGACCCTCTGGAG
GCCGTGCAAAGGTCAGTGTGCCACCGGGATGGCCACTGGTTCCTGAAGCTTCTCCAGGCAGAGCGAGACC
GCATGGAGGGGTGGTGTCAACAGATGGAGCGGGAAGAACGGGAAAACAACCTGCCCGAAGACATTCTAGG
AAAAATCCGAACCGCAGTGGGCAGTGCCCAACTTCTCATGGCCCAGAAATTCTACCAGTTCAGAGAACTG
TGTGAAGAAAACCTGAATCCTAATGCTCATCCAAGACCCACCTCCCAGGATTTGGCGGGGTTTTGGGACA
TGCTGCAGTTGTCCATAGAAAATATTAGTATGAAATTTGATGAACTTCATCAGTTAAAGGCCAATAATTG
GAAACAGATGGATCCTCTTGACAAGAAGGAGAGAAGGGCCCCTCCTCCAGTGCCAAAGAAGCCGGCGAAG
GGCCCCGCGCCGCTGATCCGGGAGCGCTCGCTGGAGAGCTCGCAGCGCCAGGAGGCCCGCAAGCGCCTGA
TGGCCGCCAAGCGCGCCGCGTCCGTCCGCCAGAACTCGGCCACCGAGAGCGCCGAGAGCATCGAGATCTA
CATCCCCGAGGCGCAGACCCGGCTCTGA

Translation (685 aa):
MNLIFHKDILFGIPANKVPQDEWTGYTPRGKDDEIPCRRMRSGSYIKAMGDEDSGDSDTSPKPSPKVAAR
RESYLKATQPSLTELTTLKISNEHSPKLQIRSHSYLRAVSEVSINRSLDSLDPAGLLTSPKFRSRNESYM
RAMSTISQVSEMEVNGQFESVCESVFSELESQAVEALDLPMPGCFRMRSHSYVRAIEKGCSQDDECVSLR
SSSPPRTTTTVRTIQSSTGVIKLSSAVEVSSCITTYKKTPPPVPPRTTTKPFISITAQSSTESAQDAYMD
GQGQRGDIISQSGLSNSTESLDSMKALTAAIEAANAQIHGPASQHMGNNTATVTTTTTIATVTTEDRKKD
HFKKNRCLSIGIQVDDAEEPDKTGENKAPSKFQSVGVQVEEEKCFRRFTRSNSVTTAVQADLDFHDNLEN
SLESIEDNSCPGPMARQFSRDASTSTVSIQGSGNHYHACAADDDFDTDFDPSILPPPDPWIDSITEDPLE
AVQRSVCHRDGHWFLKLLQAERDRMEGWCQQMEREERENNLPEDILGKIRTAVGSAQLLMAQKFYQFREL
CEENLNPNAHPRPTSQDLAGFWDMLQLSIENISMKFDELHQLKANNWKQMDPLDKKERRAPPPVPKKPAK
GPAPLIRERSLESSQRQEARKRLMAAKRAASVRQNSATESAESIEIYIPEAQTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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